G57647


Basic Information

Item Value
gene id G57647
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 766717 ~ 767700 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU68068
GGCGTCTCCTGATTGGTTCCCTGGTTGCTAAGGGACACAGTTTCCCTAGTAAcatagactgttttttttatctaaatttGTGTGGCAGTAAAATAACGCTATTAGCACACCTGTATCgaaatatttataaagtgtaAACAGGTATAAATTACCTCAGGTTATCGTTAACATTATGATTAAAGATTCACACAAAGCATGTGTTCGTTATAAACTGTGTAACTGAGGGATACAGTGTGGATTTAATGTGTAATGTCACAGACAGGCCAGTAGGGGTCAGTGTTGTCTTTAATTTACCTGCTGCTGAGGTCTTTATTCTGGAGTTCAGTAGATAAACACGACTACACTGAGGAGAGACATGTAGCTACTGTAAATGGCAATAAAGCCAACtgttaaagtgttatttaaataaaacatgcattagTGACTACAGAgagatatttaattaaataaataacaaataataagccataaagaaagagaatatttatatggaacaagaagtgatgaagaagtgatattaatatctgaaAGGAATAAACTGTAAGACTGGCAGCTGAAGTCACTGGAGTCTGAACCACACAGATCATTACACATcaggagtaagggtaccgacgcgcaccacgcaggactatacgggagtaacggtaccgacgcgcaccacgcgggactatacgggagtaacggtaccgacgcgcaccacgcgggactatacgggagtaacggtatgacgcgcaccacgcgggactatacgggagtaacggtaccgacgcgcaccacgcaggactatacgggagtaacggtaccgacgcgcaccacgcaggactatacgggagtaacggtaccgaagcgcaccacgcaggact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68068 True 863 lncRNA 0.43 2 766717 767700

Neighbor

gene id symbol gene type direction distance location
LOC117597017 NA coding upstream 168229 567218 ~ 598488 (+)
LOC117597164 NA coding upstream 487098 274120 ~ 279619 (+)
LOC113525288 LOC108267083 coding upstream 552067 207355 ~ 214650 (+)
LOC113525287 NA coding upstream 579206 178609 ~ 187511 (+)
dspa dsp,dspa,LOC108267071,LOC107567868,LOC107671686,LOC107593747,LOC107660412,LOC107705101 coding upstream 591854 136920 ~ 174863 (+)
LOC113525291 NA coding downstream 2453 770153 ~ 788020 (+)
LOC113525285 LOC108267077,LOC108442756,LOC105899226 coding downstream 42544 810244 ~ 821396 (+)
LOC113524738 NA coding downstream 120276 887976 ~ 891005 (+)
mier1b mier1 coding downstream 125125 892825 ~ 912422 (+)
LOC113524101 NA coding downstream 147774 915474 ~ 924362 (+)
LOC117597019 NA non-coding upstream 4450 761854 ~ 762267 (+)
LOC117597024 NA non-coding upstream 9434 756635 ~ 757283 (+)
G57627 LOC107562619 non-coding upstream 12824 643704 ~ 753893 (+)
G57644 NA non-coding upstream 19320 741042 ~ 747397 (+)
G57628 NA non-coding upstream 27273 673386 ~ 739444 (+)
LOC117597023 NA non-coding downstream 53876 821576 ~ 825888 (+)
G57656 NA non-coding downstream 83660 851360 ~ 853222 (+)
LOC113524726 NA non-coding downstream 90948 858648 ~ 861345 (+)
G57635 NA non-coding downstream 167486 935186 ~ 937349 (+)
G57679 NA non-coding downstream 188572 956272 ~ 1044198 (+)
G57583 NA other upstream 358921 355813 ~ 407796 (+)
G57528 LOC108267083 other upstream 513291 199248 ~ 253426 (+)
LOC113525551 LOC108268216 other upstream 729031 28790 ~ 37686 (+)
tmie tmie,LOC107708584,LOC107671654,LOC102776014,LOC106599657,LOC107567872 other downstream 660508 1428208 ~ 1442113 (+)
LOC113523999 abhd3 other downstream 1475000 2242700 ~ 2274093 (+)
LOC113524005 NA other downstream 1592166 2359866 ~ 2378916 (+)
LOC113523987 NA other downstream 1621696 2389396 ~ 2391485 (+)
LOC113523985 NA other downstream 1634945 2402645 ~ 2430374 (+)

Expression


Co-expression Network