LOC113523987


Basic Information

Item Value
gene id LOC113523987
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2389396 ~ 2391485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69122
AAACTCTAGATTGAGGTGATATCTGCATTAATACCACTCTGTTCACATcgtgatcatcatcatcatcatcaccatcagcaGTCATGTCCTCTCGTTCTCTCGTGCTGCTTCTGCTGGTTCTCACCTGCCTTCAGTCCTTCACAACGGCCCAGAATGCACATGGACCAGAGAAATGCTGCTTCAGTTACCAGACACATCGAATCCCTGTAAGACTCATTACAAAGTATCAAGAAACAGACCATTCCTGTACAAAACCTGGAGTCATctttATCCTAAAGACCGACCGTGAGGTGTGTGCAGACCCCGGCGTCGAGTGGGTGAAggacaacatgaaaaaaattgaCGACCGTCTGATTTTACAAGCCTGATCCAAAATCAAATGAGTTCTTAAATCCTCTctccattaataattaatgcttCTTTTacaaaatgcactttttatATAGCCAGAGAGAAGGAATGAAgctttttattataaatcatatttaaacataaactgAGCCTAGCATTGTTTAACTGATTTATTCTATAGACTGTGgacatgaattcatttattttttttaatgtataaattgCATCTTAAATTTCagggctttttttaaattacattttcccattttaaaagaaaacaatattggATGCATTCAaactctttaaaatgtttatgtcaCATCTTTGATGCCagcattaatatatacatatatgggtaa
>XM_026910097.2
CTGTTCACATcgtgatcatcatcatcatcatcaccatcagcaGTCATGTCCTCTCGTTCTCTCGTGCTGCTTCTGCTGGTTCTCACCTGCCTTCAGTCCTTCACAACGGCCCAGAATGCACATGGACCAGAGAAATGCTGCTTCAGTTACCAGACACATCGAATCCCTGTAAGACTCATTACAAAGTATCAAGAAACAGACCATTCCTGTACAAAACCTGGAGTCATctttATCCTAAAGACCGACCGTGAGGTGTGTGCAGACCCCGGCGTCGAGTGGGTGAAggacaacatgaaaaaaattgaCGACCGTCTGATTTTACAAGCCTGATCCAAAATCAAATGAGTTCTTAAATCCTCTctccattaataattaatgcttCTTTTacaaaatgcactttttatATAGCCAGAGAGAAGGAATGAAgctttttattataaatcatatttaaacataaactgAGCCTAGCATTGTTTAACTGATTTATTCTATAGACTGTGgacatgaattcatttattttttttaatgtataaattgCATCTTAAATTTCagggctttttttaaattaca

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU69122 True 710 TUCP 0.36 3 2389396 2391485
XM_026910097.2 False 570 mRNA 0.38 3 2389434 2391383

Neighbor

gene id symbol gene type direction distance location
LOC113524016 NA coding upstream 33765 2354357 ~ 2355631 (+)
rock1 rock1 coding upstream 444577 1916587 ~ 1944819 (+)
thoc1 thoc1,LOC107727519,LOC107711694,LOC107671701 coding upstream 520983 1856761 ~ 1868413 (+)
LOC113524097 LOC108267089 coding upstream 551980 1834967 ~ 1837416 (+)
LOC113524138 LOC108267091,LOC108439989,LOC102776977 coding upstream 559898 1820107 ~ 1829498 (+)
LOC113523984 NA coding downstream 7756 2399241 ~ 2400713 (+)
LOC117597052 NA coding downstream 42122 2433607 ~ 2439297 (+)
LOC113523986 NA coding downstream 66800 2458285 ~ 2470206 (+)
LOC117595726 NA coding downstream 103924 2495409 ~ 2503332 (+)
LOC113524013 NA coding downstream 132720 2524205 ~ 2525542 (+)
G58403 NA non-coding upstream 78989 2308848 ~ 2310407 (+)
G58359 NA non-coding upstream 154197 2174610 ~ 2235199 (+)
G58332 NA non-coding upstream 286222 2071028 ~ 2103174 (+)
G58309 LOC108267102 non-coding upstream 350281 2015291 ~ 2039115 (+)
G58302 NA non-coding upstream 384777 2004149 ~ 2004619 (+)
G58433 NA non-coding downstream 114245 2505730 ~ 2588493 (+)
LOC117597104 NA non-coding downstream 219768 2611253 ~ 2620079 (+)
G58465 NA non-coding downstream 290552 2682037 ~ 2727843 (+)
G58458 NA non-coding downstream 324148 2715633 ~ 2782340 (+)
G58473 NA non-coding downstream 395984 2787469 ~ 2802044 (+)
LOC113524005 NA other upstream 10480 2359866 ~ 2378916 (+)
LOC113523999 abhd3 other upstream 115303 2242700 ~ 2274093 (+)
tmie tmie,LOC107708584,LOC107671654,LOC102776014,LOC106599657,LOC107567872 other upstream 947283 1428208 ~ 1442113 (+)
G57563 LOC108267084 other upstream 1538901 300980 ~ 850495 (+)
G57583 NA other upstream 1981600 355813 ~ 407796 (+)
LOC113523985 NA other downstream 11160 2402645 ~ 2430374 (+)
LOC113524000 NA other downstream 121016 2512501 ~ 2525055 (+)
G58436 NA other downstream 132713 2524198 ~ 2538589 (+)
G58442 NA other downstream 163875 2555360 ~ 2615864 (+)
LOC113524004 NA other downstream 185257 2576742 ~ 2604755 (+)

Expression


Co-expression Network