LOC117597052


Basic Information

Item Value
gene id LOC117597052
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2433607 ~ 2439297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303585.1
TCATAAGTTGAGTGCTGAGGTGATACCTGCATTAATACGATTGTGTtcacatcaccatcatcaccatcatcatcaccatcaacaccatgTCCTCTCGTTCTCTCCTGCTGGTTCTGCTGGTTCTCTTCTACCTTCAGTTCTTCACAACTGCCCAGAAGTCAAAGGGACCAGATAAATGCTGTTACAAATACCAGCCACATCCAATCCCTGTAAGACTCATTACAGGGTATAAAGAAACAGACCATGAGTGTACAACACCTGGAGTCATTTTCACGCTAAAGAGCGGTCGCCATATGTGTGCAGATCCCAGAGTTGAGTGGGTGCAGAATATCATGAAAACAATTGACAAGGGCTCGTTTAGAAGCCGGGTCCAACCTGAAGAGCCTGACAACCCAGTTCCTCCTCCCTCAACCAGGAGAAACAAGCCTGACAACCCAGTTCCTCCTCCTTCAACCAGGAGAAACAAGCCTGACAACCCAGTTCCTCCTCCTGTACTCAGTAGAAACAAGCCTGAGAATCCAGTTTCTACTGCCTCAACCAATACAGAACAGCCTGTTACTACTAGCGAGCCAGTTTCTACTGCCTTACCCAATACAGAACAGTCTGACAAGACACATTCTCCTGCCTCATCAAATATTCTACGTAAGGGAATTAATCATACAGTGCAGACAgtttctgtttgcattttcGTATTTTTATTAGTGTCCCTTATAGTGtcatttattatattctattatcTATAGCTGTAGGGGAATCTCTGTGGTTGTatagttttaatattatatgGTATTTTCTACAATGGTGGTATAGTGTTAGTACAGAAGTATCTGTAGTGGTATAgagttagtataggagtatctatagtggtatagtgttagtataggagtagGTATAGAGGTATAttgttagtataggagtatctaCAGTGGCATAGTtttagtataggagtatgtaTAGTGGTATAGTGTAAGTATAGCAATGTCTATAGTGGTATAGTGTTACTATAGGAGTATCTATAGTGGTACAGTGTTAGTATAAGAGTATATATAGTGGTACAGTGTTAGTATAGGTGTATCTATagtggtatagtgttagtatgGGTGTATCTATAGTGGAACAGTGTTAGTATAGGTGTATCTATACTGGTACAGTGATAGTTTCGGAGTATATATAGTGGTACAGTGTTGGTATAGGAGTATCTATAGTGGTACACTGTTAGTATGGGAGTATGTATAGTGGTACAGTGTTAGTATAGGTGTATCTATAGTGGTacagtgttagtataggagtatctaTAGTGGTACACTGTTAGTATGGGAGTATGTATAGTGGTACAGTTTTAGTAAAGGAGTATGTATAGTGGTATATTGTTAGTATGGGAGTATCTATAGCGGTATAGTGCTAGTATAGGAATATCTACagtggtatagtgttagtataggagtatctatagtggtatagtgttagtataggagtatctaTAGTGGTACAGTGTTAGTATAGGAATATCTACAGTGGTAgagtgttagtataggagtatctatagtggtatagtgttagtataggagtatctaTAGTGGTACAGTGTTAGTATAGGTGTATCTATagtggtatagtgttagtataggtGTATGTATAGTGGTACAGTTTTAGTAAAGGAGTATGTATAGTGGTATATTGTTAGTATGGGAGTATCTATAGTGGTACAGTGTTAGTATTGGTGTAACTATagtggtatagtgttagtataggagtatctaAAGTGGTacagtgttagtataggagtatgtatagtggtatagtgttagtataggagtagCTATGctggtatagtgttagtataggagtatttATTGTGGAACAGTGTTAGTCTAGGTGTATCTATAGTGGTACAGTGTTAGTATAAGAGTATCTATAGTGGTacagtgttagtataggagtatctaTAGCATTATATTGTTAGTGTAGGAGTATGTATAGTGGTACAGCGTTAGTAAAGGAGTACGTATAGTGatatagtgttagtataggagtatcaATAGTGGTATATTGTTAGTAGTGTATATAGTGGGGAAACAGTGTCTACtaagtatttgtttttgttagttAATATACTTCTACTGAATATATCCACTTCAGATGTACTCACTTAAAGTCTTTTCACGTTGTACTTATATAAtgagaaaaattttaaaaagatgtttctaagttaataagaaaaggcactttgtcatgttaccaagaaacagcaa

Function

GO: NA

KEGG:

id description
K05511 CCL15_23; C-C motif chemokine 15/23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303585.1 True 2252 mRNA 0.37 9 2433607 2439297

Neighbor

gene id symbol gene type direction distance location
LOC113523984 NA coding upstream 32894 2399241 ~ 2400713 (+)
LOC113524016 NA coding upstream 77976 2354357 ~ 2355631 (+)
rock1 rock1 coding upstream 488788 1916587 ~ 1944819 (+)
thoc1 thoc1,LOC107727519,LOC107711694,LOC107671701 coding upstream 565194 1856761 ~ 1868413 (+)
LOC113524097 LOC108267089 coding upstream 596191 1834967 ~ 1837416 (+)
LOC113523986 NA coding downstream 18988 2458285 ~ 2470206 (+)
LOC117595726 NA coding downstream 56112 2495409 ~ 2503332 (+)
LOC113524013 NA coding downstream 84908 2524205 ~ 2525542 (+)
LOC113524012 NA coding downstream 97975 2537272 ~ 2538605 (+)
LOC117597103 NA coding downstream 167761 2607058 ~ 2614064 (+)
G58403 NA non-coding upstream 123200 2308848 ~ 2310407 (+)
G58359 NA non-coding upstream 198408 2174610 ~ 2235199 (+)
G58332 NA non-coding upstream 330433 2071028 ~ 2103174 (+)
G58309 LOC108267102 non-coding upstream 394492 2015291 ~ 2039115 (+)
G58302 NA non-coding upstream 428988 2004149 ~ 2004619 (+)
G58433 NA non-coding downstream 66433 2505730 ~ 2588493 (+)
LOC117597104 NA non-coding downstream 171956 2611253 ~ 2620079 (+)
G58465 NA non-coding downstream 242740 2682037 ~ 2727843 (+)
G58458 NA non-coding downstream 276336 2715633 ~ 2782340 (+)
G58473 NA non-coding downstream 348172 2787469 ~ 2802044 (+)
LOC113523985 NA other upstream 3233 2402645 ~ 2430374 (+)
LOC113523987 NA other upstream 42122 2389396 ~ 2391485 (+)
LOC113524005 NA other upstream 54691 2359866 ~ 2378916 (+)
LOC113523999 abhd3 other upstream 159514 2242700 ~ 2274093 (+)
tmie tmie,LOC107708584,LOC107671654,LOC102776014,LOC106599657,LOC107567872 other upstream 991494 1428208 ~ 1442113 (+)
LOC113524000 NA other downstream 73204 2512501 ~ 2525055 (+)
G58436 NA other downstream 84901 2524198 ~ 2538589 (+)
G58442 NA other downstream 116063 2555360 ~ 2615864 (+)
LOC113524004 NA other downstream 137445 2576742 ~ 2604755 (+)
G58443 NA other downstream 167778 2607075 ~ 2618319 (+)

Expression


Co-expression Network