XLOC_002430


Basic Information

Item Value
gene id XLOC_002430
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42729946 ~ 42731994 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005942
AGAGAGAGCAGTTTGataaatagaggtaaagttggttttatattcgcacattcagactttccccttaatattataatttcattaaagtattatttgcaaactctaaattgCGAAAttttattagcagccaatgactatcaaagtacagcattgttcacagtcaaataaacagtgttaatgttgttttcaagtcatacctgcatgctaattccgatcgaatattcaaagtaaaatggtaaacaatataaagacttcttaatgaacaaatgtgcaaatataaaaccaactttacctctatgtttgATAAAAGCTAGATTTAGATTTTCCAATCTTAACCACAAACTAATTCTAATGCGCACTTACATTTAGTAATgattgttattttcatttttatgaagGCCAGATGTTAAGATTATAAAGCAAACTGAATATGAGCAGATTTATGAATTCGAGtcaattaatgttaatatttgtcTTTTTAATGGAGATTTAACCCAAATGTAGTAGCTGTTATCCTTCTGACCCTCATCATCACTACACCTCCAGAACACACATCAGCCGCCCAGAGTGAAACTGAACTGGACCCCGGCTTACAGTCACCCACCAATCGAAGCTTCACCACTGAACTCCACTGAAGAGTGAGAGATGTTTGGGCAGGTATTGACCATGGAAAAAGTGACTGAGCAGAGCGAGAGCGTCACCCCACCTGACGCAGAGGGCTTCGTCAGGTTTCTTCAACCGTTGTTTGGGTCG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005942 True 753 lncRNA 0.37 2 42729946 42731994

Neighbor

gene id symbol gene type direction distance location
XLOC_002429 NA coding upstream 6725 42720841 ~ 42723221 (+)
XLOC_002428 rhobtb2b coding upstream 13207 42678520 ~ 42716739 (+)
XLOC_002427 fgfr1b coding upstream 68501 42589391 ~ 42661445 (+)
XLOC_002426 kctd9b coding upstream 174124 42542517 ~ 42555822 (+)
XLOC_002425 actr1 coding upstream 189107 42521943 ~ 42540839 (+)
XLOC_002431 CABZ01063556.1 coding downstream 1216 42733210 ~ 42740662 (+)
XLOC_002432 NA coding downstream 9091 42741085 ~ 42745580 (+)
XLOC_002433 NA coding downstream 87732 42819726 ~ 42820906 (+)
XLOC_002434 zcchc9 coding downstream 166109 42898103 ~ 42903716 (+)
XLOC_002435 atg10 coding downstream 305070 43037064 ~ 43076207 (+)
XLOC_002424 NA non-coding upstream 252687 42470616 ~ 42477259 (+)
XLOC_002417 NA non-coding upstream 743663 41982997 ~ 41986283 (+)
XLOC_002414 BX005006.1 non-coding upstream 889913 41839919 ~ 41840033 (+)
XLOC_002406 CU571179.1 non-coding upstream 1765134 40939664 ~ 40964812 (+)
XLOC_002439 NA non-coding downstream 786600 43518594 ~ 43525213 (+)
XLOC_002441 NA non-coding downstream 1096333 43828327 ~ 43938288 (+)
XLOC_002442 CR384089.1 non-coding downstream 1261358 43993352 ~ 44024651 (+)

Expression


Co-expression Network