XLOC_002432


Basic Information

Item Value
gene id XLOC_002432
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42741085 ~ 42745580 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005734
atatataaagtaaaactCCACTGTTTATCTCTAGGGGAGCTGTAAAATTAGACTACtttcaaaaaaatgtgttgtgttCAGATCTAAAACAAACAAGATCCACAGCGTTGCCATGtgaataaagatttatttatgaGCATTGTTGAGGAAACAATACCGAGAGATGATCGAACAGCGTTCTAGGAAAGGTCATTGTTTTATAAAAGAGGGACAGATGTGTTTATTGGTTTCTATTGGCAGACGTCACTATGATTCTCCGATCTAAATCATCTACAATACTGGAGGATGGAAATAAggatgttaaaaataaatcaaaggttGCCAGGACTCGCTCTCCGTTTGTTTTTCTCCTTCACATTTGATCATATCCATAAACTGCATCATTATTTGGTTAGAAACATCAACTAAGCGCATGTAGAAACATAAGCTGTAGAGATGTAAATGAATCAGTAATGTTACATTCATACATTAAAACCCGGGAGACGCTTCCAAGGAAACCTGCTGCATGGTTAAAATGATTGCACTGGATATTTCATGTCCCCCAAAACCTTCATTTGACAGCCACACGGCCCTCTgcgctggagtgtgtgtgtgtgtgtgtgtgtgtgttcgttctCAGGCACAATCGCTCACTTATTCTGGCTGGAGATTCTAAACTCTTCAATTACGCTGTAGATTTTGATCATGTGGACTgcttgtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagttttatAGTTAAATAATTGATTAAGGTTAACGTGGAAGCTTGTTTCTGCTGTGAGATTCAATAAAAAAAGgtcattttgacttttttaatatcacaattcagatttttgcTTGGTTTTCAGATTatatttgcagttcttttatattttgtgacatgaaaatataattttaaagtcattttcctGCATCAGAAACAGCGTTTGCTTCATTTATATTGCAAGTTTTCTAAGTGATTATAAGTGAAAAATATTATGTATCTTgcaatttaacagattttttaaaattattattattacttttgttgATATCTCACAATTCGGAGTTTGTTTTGGCTATTTTTGtgacttaaaaatataatttcaaagTCATTTTTCTGCATTGGAAACAGTTTTTTCATAATTTCTATTGCAAGTTTGTAAGGTTTGTGTGAAATTATGAGGGGAAAATATAATGCAACTtgcaatttaacattttattattattattattattattattattattgttgatttctCACAAATCTGAGTTTGCCTGCAGCGCTATAAAGCCTGAACTTTAGTGTAATTTTGCAGGTTTATAGGCTGTTTAGCATTGGGATCTGCTTAATATCTTGTAATTTTTGAGACTTGAAAGCTGCTGTTTTTTCACCCCTCACAAATgcaagtttaatttaatatttagagGAATTTTAGGGAAAAACTGCAGGATCTTAACTTGAAATGTAACTtcaaatttagatttttcttGGTTTTTAGGTTATATTTTGGCCATTTTTGAAAAGTCATTGTCCTGCATCAGAAgcagtttttccttcattttttatTGCAATTTTGTGAGAAATTATGAGGGAAAAATAGGATGTAACTTGCCAATTAGCAGATTGTTAAATTACTATTATATTTGTtgatttctcacaattctgagtttgtCTGCAGCTCTATAAGCTTTAGTGTAATTTTGCAGGTTTATAGGCTGTTTAGCATTGTGAGCTGCTTTATATCTTGAAATGTGACTTCAAATTCAGATTTTTGCTTGGTTTTTACTTCACATTTGCAGTTCTTTTATATTTTGgcaatttttatcattttatcatttatcaaaatatcattttaaagtaatttttctgCATTGGAAacagtttttccttcatttttattGCAAGTTTATAATTTGTGTGGGGaattatgaagaaaaaaatatgatgtaaCTTGCAATTTAGcagattattaaaataactattattttttgttgatatctcacaattctgagtttgtCTGCAGCTCTATAAGCTTTAGTGTAATTTTGCAGGTTTATAGGCTGTTTAGCTTTGTAAGCTGCTTTATATCTTGAAATGTGACTTCAAATTCAGATTTTTGCTcagttttttgtttatatttgcaGTTCATTTATATCTTGGCCATTTTTGTGACATGAAAATACCATTTTAAAGTACATTTCTGATAAGAAacagtttttccttcatttctatTGCAAGTTTGTAAGGAATAATATTGTGCATTTTAGcagattttattaaaattatcagTAATTTTGTtgatatctcacaattctgagtttgtCTGCAGCGCTATAAAACTTCAACTGTAGTGTATTTTGCAGGTTTATAGGCTGTTTAGCATTGTGATCTGCTTTATATCTTGCAGTTTTTACCTTTTTTGTGCTGGTAACTGCTGCTTTTTCCCCTCACAAAATGCAAATTTCATGTAATATTTAGAGGAATTATAGGGAAAAAACTGCAGGATCTTCACTAGAAATGTAACCTCAAATTCAGATTTTTCTTAATTGTGAGTTTGtcctaaacattacattttttcctGCAGTTATATCAGTTTATTGACTGTTTTGCAAGTCTGGCATTCTCAAAAATCGTACAAAACTTTTAAATTTGAAACTTAACCTCAGAATTCTGAGATCAAAGTCAAGCAAGACAAAAAAAGTCATACCTTTTTTTAAAGTCTCCCTGTTGAAACAAGCGTCCACAGTTCAACATGTGAAGGGATTTGGCAAATAAAAGGAATTACAAGGAAGTGTGACTGCATTTACATcctaaaacataaaagaaaatacGAAGTAAAAGGCACGGACAGACATAAGCAGGAGACACTATATAATGTGCATGAATGAAGCAAAAACATAATCACTTGTAAATAATAGAATAGCTATCTCTTTCTCGTAGAAATAATATTCATAAAGGTAGTTCTATTAAAACTGATGCTGTGGCAGGGAGTTTCTTGAAACCGCTAACAGTTCTTTACATACAAGTTTTGGAAAAGAGTGTTTTCTTCTGGATgctggatgtgtgtgtgcgtgtgtgtgtcagtgtctcAGCAGCTGCAGCCATCACCGGAGGACACAGGTCTGTCGTCTCGCAGTTTGATCTGGTCAGGGAAATCGTACGTCTCCACCTCAGACTC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1990399 epithelium regeneration biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005734 True 3168 lncRNA 0.33 2 42741085 42745580

Neighbor

gene id symbol gene type direction distance location
XLOC_002431 CABZ01063556.1 coding upstream 423 42733210 ~ 42740662 (+)
XLOC_002430 NA coding upstream 9091 42729946 ~ 42731994 (+)
XLOC_002429 NA coding upstream 17864 42720841 ~ 42723221 (+)
XLOC_002428 rhobtb2b coding upstream 24346 42678520 ~ 42716739 (+)
XLOC_002427 fgfr1b coding upstream 79640 42589391 ~ 42661445 (+)
XLOC_002433 NA coding downstream 74146 42819726 ~ 42820906 (+)
XLOC_002434 zcchc9 coding downstream 152523 42898103 ~ 42903716 (+)
XLOC_002435 atg10 coding downstream 291484 43037064 ~ 43076207 (+)
XLOC_002436 xrcc4 coding downstream 342690 43088270 ~ 43184354 (+)
XLOC_002437 vcanb coding downstream 443098 43188678 ~ 43263885 (+)
XLOC_002424 NA non-coding upstream 263826 42470616 ~ 42477259 (+)
XLOC_002417 NA non-coding upstream 754802 41982997 ~ 41986283 (+)
XLOC_002414 BX005006.1 non-coding upstream 901052 41839919 ~ 41840033 (+)
XLOC_002439 NA non-coding downstream 773014 43518594 ~ 43525213 (+)
XLOC_002441 NA non-coding downstream 1082747 43828327 ~ 43938288 (+)
XLOC_002442 CR384089.1 non-coding downstream 1247772 43993352 ~ 44024651 (+)
XLOC_002445 NA non-coding downstream 1310169 44055749 ~ 44198211 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G363369 NA non-coding CI01000158 null 1014803 ~ 1016796 (+)