RNA id: TCONS_00004568


Basic Information

Item Value
RNA id TCONS_00004568
length 1333
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_002435
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43037064 ~ 43076207 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGTGCTGAATAACATTGGCTGTTCCGTGGCGCCCCCTCCGCGCTCAGGATCCCGGAAGTGGCCGTGTGAGATCATGATGACCGGTGAGAGAAAGCCTGCATCATGTTTTCTGGATGAAAAGACCTTCCGGCTTTGCTGTCGGCTTTTTCTCCAGCACTCGGAGAGCATCCAGGACGGCTGGATCTGGGAGCAGATCAAGGGCTCTGATGAAGGCTTCATGAAGAAGACTGTGCTCATCCCTGTAAAATCTAGCCTTTTGGACAAACAGCATGAGTCTATACAGGCTGAAAACACTGAACTTCCGACAGACGACTTTGAGGCAGACGCTGAGGATGAAACGGCTGGAGTTGATGCGGTGTGTGAAAGTCATGCTGTGCTGCGCTATGAATACCACGTTCTGTATTCCTGCAGCTATCAGATCCCCGTCCTCTATTTCAGAGCATCAGCGTTAGATGGGCGCTCGCTTTCTCTGGAGGAGGTGTGGAGCAACGTTCATCCAAACTACAGACAGAGGCTGAAGCAGGAGCCCTGGGACACACTGACACAGCAGgaacaTCCACTACTTGGCCAGCCGTTTTTCATGCTTCATCCATGTCGCACAGAGGAGTTCATGAAACCCGCTCTGGAATTAGCACATGCTCAAAACAGGAAGGTGAACTATATTGTGAGCTGGCTCAGTGTTGTGGGTCCTGTCGTCGGCCTGGACGTCCCGTTGAGCTTCAGCACTGCCGTTTCTGCTCCAGATTAAATTGTCTTTCTGTCATCCTGATCTGATCTTCAGTTTCCAGAGGACCTGCAGAGCTAACCTGTGGTGAATCTGCAGAAACGGTTTATCATTAACCAGCATCAACCGTCTCTACATGGTTAAACTGGTAAAGAGTTGTGCAGGAACATTCAGCACATGTGCACAAACCAGCTCAGACTTTCTTAGTGAAGTGTAAACACATGGACTGTCAGCGTGTCGTTCATCAGGGATGCTTTCAAATGATCCAAAGTAACAGTAAAGATGttttaatgttacaaaagattaCATGTCctataaataaatgctgtttttaggCTGATGTCATAGAATTATTTTTTCTGTCAAGAATCTTgacagggtggcacggtggctcagtggttagcactgtggcttccagcaagtaggtcactggttcgagaccCGTCtcggtcagttgtcatttctgtatggagtttgcatgttctcctcgtgttggcgtgggttttctccgcgTGTTCTGTTTTCCCTCTCAGTccaaaccatagactgtaaaatatatggacgtagtatccgtgatgtcacccataggtttctaaagagcgcaaaa

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0032446 protein modification by small protein conjugation biological_process
GO:0016236 macroautophagy biological_process
GO:0006497 protein lipidation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0019777 Atg12 transferase activity molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04131 Membrane trafficking
ko04121 Ubiquitin system
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-051030-72 Predicted to enable Atg12 transferase activity. Predicted to be involved in macroautophagy; protein lipidation; and protein modification by small protein conjugation. Orthologous to human ATG10 (autophagy related 10).

Ensembl:

ensembl_id ENSDART00000160159

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005943 lncRNA upstream 216158 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 291484 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005942 lncRNA upstream 305070 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005941 lncRNA upstream 313843 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005940 lncRNA upstream 559805 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00004580 lncRNA downstream 360706 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005944 lncRNA downstream 445071 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA downstream 450047 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00005946 lncRNA downstream 754804 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005947 lncRNA downstream 754804 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00004567 mRNA upstream 133348 42898103 ~ 42903716 (+) True XLOC_002434
TCONS_00004566 mRNA upstream 296402 42733210 ~ 42740662 (+) True XLOC_002431
TCONS_00004563 mRNA upstream 320325 42678520 ~ 42716739 (+) False XLOC_002428
TCONS_00004564 mRNA upstream 320325 42690374 ~ 42716739 (+) False XLOC_002428
TCONS_00004565 mRNA upstream 345240 42691210 ~ 42691824 (+) True XLOC_002428
TCONS_00004571 mRNA downstream 14747 43088270 ~ 43184354 (+) False XLOC_002436
TCONS_00004572 mRNA downstream 44138 43117661 ~ 43183970 (+) False XLOC_002436
TCONS_00004573 mRNA downstream 44254 43117777 ~ 43184354 (+) True XLOC_002436
TCONS_00004574 mRNA downstream 115155 43188678 ~ 43262960 (+) False XLOC_002437
TCONS_00004575 mRNA downstream 115802 43189325 ~ 43263885 (+) True XLOC_002437
TCONS_00004540 other upstream 1197031 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 2288166 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 2397260 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 2427111 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 2428347 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004603 other downstream 1626294 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1834245 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 2102897 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 2164433 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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