RNA id: TCONS_00004571


Basic Information

Item Value
RNA id TCONS_00004571
length 1812
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_002436
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43088270 ~ 43184354 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTAGCATAGTAGTAGTAGCTAGCAAAGCTTTGCATGCTGATTCTGTTAAAATGCCCCCCCTAGGTTTGGATCACAACACAGGGAAGTCGTATATGTCCCATATGGAGACAATCAGAAACTAGCAGAGCTGACATACAGCCGGATTAACATGGAAAAGGCACAGGAAGGACAACTCAGGTGTCGCAGCAGTAGTGTGCGTCAGATCTCCATCTCCTCTGAGCCTCAGCGCTGTTTCTTCCTCAAGTTGGAATGGGCTGAAGATCTCGGCTCCGGCTTCGTCATCTTTCTGTGTGATGGGGAATCTGCCTGGAGCGGTGAAGTTTCCGAGGAGGACGTGTCGCGGGAGGCTCGTGAGATGGAGATGGAGCGTGATCGGTATGTCTGTGACCTGCAGCTGGCCCTGACCGGAGCACCATCAGGATCTGGAGCTTCAGATGAGGGTGAATTTACCTTCCAGCTGACACCTGAGCGGCCCGGACGACCCCAACTGCAGCTGTCTTATGAGAAGGTGCAGAAGGACATCTCGTTCAGGCTGGGCGTGGTGGATCTGCAGCCGGTGCCGGAGCCCACTGAAGTCATCCGGGAGCTCATTACTCACGGCCTGGAGCAAAGCTCACGTCTTCAGGCCTCAAACCAGCACCTGTTGGAGGAGAACCAGAAGCTGAGGAGAGAACAGCAGCACATCACTGAAGAGATGGAACGATACGTGAAGGGAAAGGAGGCGTTAGAGAGAGACCTGTACAGCCGCTTTGTGCTGGTCCTCAATGAGAAGAAAGCCAAACTCCGAGCCCTGCAGCAGAGGGTCCGAGAGCTGGAGGAGGCTGAGGAGGAGAGATCACCGAGAAAGAAAAAGGCAGATAGTGAAGATCATGAAGCGGTGGAGGCGGCAGCAGATAAGAGTCCTGATGAAGAGAGTGATTATGGAGGAAGTACGGAAGATGAACAGGAAGCAGAACCCAAACGCCTCGACCCAAAACCTCCTACAGAAGAGATGCCAGAATGCAGCCCGATGGATGACAGTCTGAATGACATCACAGACGTGGCTCCGTGCCGTAAACGCCGCCATCGGCACCTGCAGCAACTCGAGGCTCAAGCCAAACGCAAAACGCTGGAGCAGCAGCACAGATCCAGAGAGAAGCCGGTGGAAGAAACCAAAGCTGCGACCAGCAGAACGTCAAGTGTCCCGGTGAAGCCTGCAAACACTGCTGCAAACCTTGATCCAGATGAGCTGTTTGATGATATATGACGCTCTAATGATGAGCATGACTACTGTTTTTAAACTAGAGGAgaaataaaattgtcattttaaaagtattttatagtCTAACCCTGCTACAATATTACGTTTAAAGAAGGAACACTATTTTTGTAACAACAGTACAATGTTTAATGAAGATGTAAGGTGTTGATAAAGATAATAAATGTGGATGAGGttgttttttgtctcttttttgctAAGTAGGGatcttaatttgatttaaaatgcatttacatcTCAACAGCTAGGTTTTCAACTTGCATGGATTATTTCATTTGTTTACTCCTGCTGggttcaaaacaaatgcaaattcaattatgCATGTTTTTTACATACTATAAAAGAAATTTCCAGGCGTGCAACAAATGaccaggttcgagtccggggaagagcggttccagaaatcaggtaagacaaaaacagaatccaaaaaataaagtgaacgagttcataacagggtgagaacgtagTAAAATCCCAAAACgcggcaaaaaataaaatcatacgagggcttttcttttttttggaaagcttttctaaattgttgctcag

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0006310 DNA recombination biological_process
GO:0033152 immunoglobulin V(D)J recombination biological_process
GO:0010165 response to X-ray biological_process
GO:0051351 positive regulation of ligase activity biological_process
GO:0051103 DNA ligation involved in DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005958 DNA-dependent protein kinase-DNA ligase 4 complex cellular_component
GO:0032807 DNA ligase IV complex cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03450 Non-homologous end-joining
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-1755 Predicted to enable DNA binding activity. Predicted to be involved in DNA metabolic process; positive regulation of ligase activity; and response to X-ray. Predicted to act upstream of or within DNA recombination and double-strand break repair. Predicted to be located in nucleus. Predicted to be part of DNA ligase IV complex and DNA-dependent protein kinase-DNA ligase 4 complex. Human ortholog(s) of this gene implicated in multiple myeloma. Orthologous to human XRCC4 (X-ray repair cross complementing 4).

Ensembl:

ensembl_id ENSDART00000191221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005943 lncRNA upstream 267364 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 342690 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005942 lncRNA upstream 356276 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005941 lncRNA upstream 365049 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005940 lncRNA upstream 611011 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00004580 lncRNA downstream 249875 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005944 lncRNA downstream 334240 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA downstream 339216 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00005946 lncRNA downstream 643973 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005947 lncRNA downstream 643973 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00004570 mRNA upstream 12063 43039947 ~ 43076207 (+) True XLOC_002435
TCONS_00004568 mRNA upstream 14747 43037064 ~ 43073523 (+) False XLOC_002435
TCONS_00004567 mRNA upstream 184554 42898103 ~ 42903716 (+) True XLOC_002434
TCONS_00004566 mRNA upstream 347608 42733210 ~ 42740662 (+) True XLOC_002431
TCONS_00004563 mRNA upstream 371531 42678520 ~ 42716739 (+) False XLOC_002428
TCONS_00004574 mRNA downstream 4324 43188678 ~ 43262960 (+) False XLOC_002437
TCONS_00004575 mRNA downstream 4971 43189325 ~ 43263885 (+) True XLOC_002437
TCONS_00004578 mRNA downstream 222442 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004577 mRNA downstream 222442 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004576 mRNA downstream 222442 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004569 other upstream 15014 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 1248237 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 2339372 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 2448466 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 2478317 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 1515463 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1723414 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1992066 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 2053602 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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