Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004603 |
| length | 844 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.47 |
| exon number | 4 |
| gene id | XLOC_002452 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 44699734 ~ 44748270 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ko04145 | Phagosome |
| ko04913 | Ovarian steroidogenesis |
| ko04925 | Aldosterone synthesis and secretion |
| ko04927 | Cortisol synthesis and secretion |
| ko04976 | Bile secretion |
| ko04975 | Fat digestion and absorption |
| ko04979 | Cholesterol metabolism |
| ko04977 | Vitamin digestion and absorption |
| ko05160 | Hepatitis C |
| ko04934 | Cushing syndrome |
| ko04131 | Membrane trafficking |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-031126-1 | Predicted to enable lipid binding activity; low-density lipoprotein particle binding activity; and scavenger receptor activity. Predicted to be involved in cholesterol transport; plasma lipoprotein particle clearance; and recognition of apoptotic cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola and cytoplasm. Is expressed in adaxial cell; segmental plate; somite; xanthophore; and yolk syncytial layer. Orthologous to human SCARB1 (scavenger receptor class B member 1). |
| ensembl_id | ENSDART00000169466 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005949 | lncRNA | upstream | 316358 | 44380982 ~ 44383459 (+) | True | XLOC_002447 |
| TCONS_00005948 | lncRNA | upstream | 642513 | 44055749 ~ 44057304 (+) | False | XLOC_002445 |
| TCONS_00004582 | lncRNA | upstream | 675166 | 43993352 ~ 44024651 (+) | True | XLOC_002442 |
| TCONS_00005947 | lncRNA | upstream | 761529 | 43828327 ~ 43938288 (+) | True | XLOC_002441 |
| TCONS_00005946 | lncRNA | upstream | 857615 | 43828327 ~ 43842202 (+) | False | XLOC_002441 |
| TCONS_00004606 | lncRNA | downstream | 53571 | 44767388 ~ 44769521 (+) | True | XLOC_002453 |
| TCONS_00005950 | lncRNA | downstream | 199790 | 44913607 ~ 44917399 (+) | True | XLOC_002457 |
| TCONS_00005951 | lncRNA | downstream | 427127 | 45140944 ~ 45145137 (+) | True | XLOC_002465 |
| TCONS_00005952 | lncRNA | downstream | 641886 | 45355703 ~ 45356324 (+) | True | XLOC_002470 |
| TCONS_00004598 | mRNA | upstream | 5085 | 44692272 ~ 44694732 (+) | True | XLOC_002451 |
| TCONS_00004597 | mRNA | upstream | 7873 | 44677632 ~ 44691944 (+) | True | XLOC_002450 |
| TCONS_00004594 | mRNA | upstream | 27415 | 44581378 ~ 44672402 (+) | False | XLOC_002449 |
| TCONS_00004595 | mRNA | upstream | 27415 | 44584614 ~ 44672402 (+) | False | XLOC_002449 |
| TCONS_00004596 | mRNA | upstream | 27446 | 44641599 ~ 44672371 (+) | True | XLOC_002449 |
| TCONS_00004605 | mRNA | downstream | 5880 | 44719697 ~ 44745966 (+) | True | XLOC_002452 |
| TCONS_00004607 | mRNA | downstream | 97883 | 44811700 ~ 44897986 (+) | False | XLOC_002454 |
| TCONS_00004608 | mRNA | downstream | 110255 | 44824072 ~ 44901444 (+) | False | XLOC_002454 |
| TCONS_00004609 | mRNA | downstream | 122354 | 44836171 ~ 44897986 (+) | True | XLOC_002454 |
| TCONS_00004610 | mRNA | downstream | 189859 | 44903676 ~ 44914922 (+) | True | XLOC_002455 |
| TCONS_00004569 | other | upstream | 1626561 | 43037133 ~ 43073256 (+) | False | XLOC_002435 |
| TCONS_00004540 | other | upstream | 2859784 | 41839919 ~ 41840033 (+) | True | XLOC_002414 |
| TCONS_00004521 | other | upstream | 3950919 | 40747873 ~ 40748898 (+) | True | XLOC_002398 |
| TCONS_00004501 | other | upstream | 4060013 | 40638776 ~ 40639804 (+) | True | XLOC_002380 |
| TCONS_00004496 | other | upstream | 4089864 | 40609461 ~ 40609953 (+) | True | XLOC_002376 |
| TCONS_00004611 | other | downstream | 193951 | 44907768 ~ 44907883 (+) | True | XLOC_002456 |
| TCONS_00004628 | other | downstream | 462603 | 45176420 ~ 45176924 (+) | True | XLOC_002466 |
| TCONS_00004629 | other | downstream | 524139 | 45237956 ~ 45238042 (+) | True | XLOC_002467 |
