RNA id: TCONS_00004598


Basic Information

Item Value
RNA id TCONS_00004598
length 1785
RNA type mRNA
GC content 0.52
exon number 2
gene id XLOC_002451
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44692272 ~ 44694732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATTCGCTCCTGAGACGAGAGGAAAGAGACTCCCATACACCGCACTCTTACAGAAAAGAACATTTGTTTcgTAAAGATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGCGACACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGAAAACAGTTAGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACTCTAGAGGTGGAACCAAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAGGCGGTATGCAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTTCTCCGCCTCAGGGGCGGCATGCAGATCTTCGTGAAGACGCTGACTGGAAAAACCATCACTTTGGAGGTCGAGCCCAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCTGACTATAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGTATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTATAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGGTATGCAGATCTTCGTCAAGACCTTAACTGGCAAGACCATCACTCTTGAGGTGGAACCAAGTGATACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGCGGCATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACACTCGAGGTGGAACCAAGCGACACCATTGAGAACGTGAAGGCCAAAATCCAGGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACTCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTTCGTGGCGGCAAATAATCTGCTTATGATTAATCATTAATATATACAAGTCTTGAATTATCAGACCAATTCCAGTTTCCTTTATTCCTCTTAATCATTCAATAAAGTTCTTGCATTCcagaa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04137 Mitophagy - animal
ko03320 PPAR signaling pathway
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05131 Shigellosis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-061110-88 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C).

Ensembl:

ensembl_id ENSDART00000157458

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005949 lncRNA upstream 308813 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 634968 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 667621 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005947 lncRNA upstream 753984 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 850070 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00004606 lncRNA downstream 72656 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 218875 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 446212 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 660971 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004597 mRNA upstream 328 44677632 ~ 44691944 (+) True XLOC_002450
TCONS_00004594 mRNA upstream 19870 44581378 ~ 44672402 (+) False XLOC_002449
TCONS_00004595 mRNA upstream 19870 44584614 ~ 44672402 (+) False XLOC_002449
TCONS_00004596 mRNA upstream 19901 44641599 ~ 44672371 (+) True XLOC_002449
TCONS_00004593 mRNA upstream 247558 44437080 ~ 44444714 (+) False XLOC_002448
TCONS_00004599 mRNA downstream 5002 44699734 ~ 44746527 (+) False XLOC_002452
TCONS_00004602 mRNA downstream 5004 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004601 mRNA downstream 5004 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004600 mRNA downstream 5004 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004604 mRNA downstream 5371 44700103 ~ 44733857 (+) False XLOC_002452
TCONS_00004569 other upstream 1619016 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2852239 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3943374 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 4052468 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 4082319 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 5085 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 213036 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 481688 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 543224 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_01881044_01882873.mRNA True 2763 mRNA 0.46 1 CI01000158 1880184 ~ 1882946 (+)
bowfin (Amia calva) TU196604 False 1215 TUCP 0.45 3 CM030142.1 15489402 ~ 15491642 (-)