RNA id: TCONS_00004600


Basic Information

Item Value
RNA id TCONS_00004600
length 4451
RNA type mRNA
GC content 0.41
exon number 14
gene id XLOC_002452
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44699734 ~ 44748270 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCGGCGCGCTTTGCTAATCATAAACATGACGATCACGCTGCTGGACGGCTATAAAAGCTGCTCGAACACAGAGACGGACTTTAACATCGCTCACAGCTGTGCACTTCATGACCGTAAAGCTATAAGAGCATTAATTACCTCAATGAGCCGGCTTTTATGGCTTTATCTCGCGTAAATGATAGTTTGTTCAGCTGTTGAGACGGTCTCTCTCGCGTTTGGAGCTCGCCGCGCTTTCCAGAAGAAAtcactttatttatttccttCAGAACTTCTGCGTTTATTTTGAAGTGTGAGAAATAAGGATGGTGTCTCAAACGACAGTATCGATCGTGTTTTTAGTTCTGGGAGGCATGGCGTTGTTGTTCGGGACTGTCCTGGTGTTTGTGGGACCGATCATAATTGATGATCAAATAGTGAAGAATGTGGAGATCAATCCCAAAAACGATCTCTCCTACACCATGTGGAAGGACATCCCGGttcctttcttcatgtctgtttattttttccacatcgTCAATCCTGATGAGATCCTGAAAGGAGAAAGGCCCATGGTGATCCAGAGAGGGCCGTACGTGTACCGAGAAAATCGCTGGAAGGACAACATCACGTTTCATGAAAACCACACGGTGTCATATAAGGAGTATCGTCAGTATTTCTTTGAGGAGAGCATGTCTGTGGGCGACGAGTCTGATGTGGTCACCATCCCTAATATGCTGGTGCTGGGAGCATCAGTGATGATGGAGAACATGCCGTTTCCCGTCCGCCTTCTGCTCAGCACCACCTTCAAGACCTTTAACGAGGGTCCGTTCCTGACCAAACCAGTAGGAGAGCTGATGTGGGGCTATGACAGCAAACTAGTGGACTTCCTCAACAAATACCTGCCCGGCATGCTCCCGTCCAGCGGCAAATTCGGCTTATTTGCTGATTTTAATAACTCCAACACGGGGCTGTTCACCATCTTCACCGGCCGAGACGACATCCGCAAGGTGCACATGGTGGACTCCTGGAACGGCctcaaaaatGTGGACTACTGGAGGTCTGATCAGTGTAATATGATCAACGGCACAGCGGGTCAGATGTGGCCTCCTTTTATGACCAAAGAGACCACCATGCCCTTCTACAGCCCAGACGCCTGCCGGTCGATGGAGCTGGTGTATCAGCGGCCGCTGGTGTCCAGTGGGATTCCTGTTTACCGATACGTCTCTCCGAAAACTCTGTTTGCAAACGGGGCAGACTTTCCTCCAAATGAAGGATTCTGTCCGTGCAGGCAGTCGGGCCTGCTGAACGTCAGCTCCTGCAGACACGGTTCTCCAACATTCATCTCTCAGCCGCACTTTTATAACGCTGACCCGCAGCTGCTGGACACAGTCAGTGGATTGAGCCCAAGTGAAGATGAACATGGCCTTTTTATTGATATCCACCCGGAGACTGGTGTGCCGGTGAACGTCTCTGTTCGGTTGCAGCTCAACCTTTTCTTAAAGAAAGTTTCGGGAATCTCAGAAACAGGGAATATAGCGGAGGTGGTGATGCCCATGCTGTGGTTTGAAGAGAGCGGCTACATCGACGGACCCGTCCTGCACACGTTTCGCACCAATCTGGTGGTTCTGCCAAAGGTCATGGAGTACATGCAGTACATCTTCATCGCTCTCGGCCTCGCTGCCATCCTGACTGCTGTCATATTATTCCTCACCGATAAGAAAGTCTGGAAAAAGTCTTCACAAACTCTCACACAAGCGGACAACGTAAACCATTCAAAACAGCATCCGGCCAATGAGACGCAGGCTGAGAAATATAACCAGAGCAACACAGGTAAAAAGTAAAACGAGTGGTTCGTCCAGCACAGATGTGGATCCATCCAGCACAACCAGTGAAAAAGCCCCATTACTACAGTCACCAACCAGCTGAACCATCATCCACATTCACAATATTTAAAAGTTCCACAAATAAagcttattttattataacaagCTGTGGATGATTGGACTGGATCCAGTACAGATGATGCATTATGAactcttgtgtgtgtttttgtacagCGGTTGGGTTCTCCATGGAGTTTGCATTACATTTAGCATTGAAAAACTGAGCATCTGTGTTATGGTCTGGGttagttaaatatttttattttgaaaatacttgAATATACAAGATTGTGAAATGGTGcacactaaaattaaacaacactgTCTAAACACTCTAATTTCCTACCaggaaaaaaactattcaaagttATCCTTTGGTAACCTTTAATCTATTGTAAAAAAAGGAAGTGCCTTGAACATTTTCTGACAATATCGTGCCATTATTAACTTAAATATGCTGTCACAGCAGATAAACATGCTGAGCATGCATATTTCCCAATACTTTGAATACATGTGTTGATAATCAGTTTTTAAAGGTTCTCAGAGGatgtaaaatattgttaaatgtcCATGTGTTTGCGTTTTTCTGGCtgttatataaaatgaaatattttttttttttttttgtatttgaggTTTATAGTTTCAGATGTTGTAAAAACTTTGGACAAAGGACAAAAAAAAGCATGAGCCATATGAGCCGAAATGTTTAACACCTTATAAATGGCGCTTTTAATTGTGTATCAAGAGATTATGACTGTTTTTACTAAACATGTAATTGTGGACTGAATAAATTGCGTTTCACATCAAAATCAGATATAAATGTGGAACAAAATAAGCACAATTTCAAACTCTTTATTGCTGGAAGCCTGGTTGAATGATTCTGGAGAACATTTGTCTAAGATTAAAACATGTAAGGAAAACAACCGTGTACTATCACCACGGATAAAATTCATTCGCCTATCTGAGGTGGGTTTCGTTTTGCCGCCATTTTCGTCGTCAGTTCTGTTTTGCCGCGCAAGATGGCGGCAGCGAGCAGCAGTAGAAGCGGGTTCGTGCTGAAGGCGAAACGTTTTGCATTTGAAGGTAAATGTTTGctcgttttgtttgtttttaagcagccagatttcatttatttgatcTTAATGTTTGATGCAGAGTACGGTGATGTTGAGGAGATGTGTCTCGGTaaatattttgttgtgttttcaaCAAGGAAGAGGTCCTTATACGTGAGTTTTTAAgttataaatgttttgttcagATTGTCACAGGCCAGGCAACTGTTTTGTAGCCTTTCAGAATTAACCTTTCTCTTCAGTTCGTGTAAATCtcgatttttgtaaattatattgGATCAGATAACACTATGATACAGTAGGCCTGTGATTATTAGGCCTATGACCAGACTTCCACCTTCAGTTCAGGCTGGTTTGTATTATGAGTTTAAAAATTGGACTTCTAGAcctaaaatgttctgtttttccaatttttctactataaaatatGTAGTGTGCCcataaaaagaaatacattttaataaagtaaACATAACTATTGACTTTTAATGTAATGTGATAATCGGCTTGTTAGGAAAGTCTATTTGTTAATATCTCAATCATCactgcattgcattttgttttaaagGTGCAGAGCTTTTACTTTACGAgataggctggttttagctggtcaaccaggctggttttagaggggttttggccatttccagcctggtcttagctggtcaggctgggagatgaccagctaaaaccatcttgaCTTGCCTGCCTGGCTGGGAGCCCAACCAAAACCAaaactggtcaagctggttttagctggatttagctggttattttccagcctgaccagaccaggctggaaaccagcctggaaatggccaaaacccctctaaaacaaggctggtcaaccaggtaaaaccagccaaccagcctaggctggtttaagctggatttttgaGCAgggcgttatggatgtgactgaaaaagtctgcgagtttacagtagggctgcacaatatatagtttcagcattgataaaGCAATGTGAACATTCGCAATAGACATATCACAGAATCTGAAATATGCAGTCAGAATTCACTGAAgccacaattgaaaaaaaaacttgattaatTGCTACCAAAAATGGCgttatttgcatatatatttagGGTCTCAGACTGTGTAAACATTCCAAGCAAGTTTTAAGCAATTGGGCacaataaattattatgtttataactttaataaagattattaacgtttataaagtgttattttatatttgataatTTAATGGACTTGAATACTTCTAGACTCCCAGAAAACTTTGAAGCAccgtttaatgtatttttatttttgctactgtatttacaaatacttgtgattggtttattatattttatccaGATGTAGGCATGAGCTGGTAtaatgtgattactgctctaaaataaaaataaaaaactatatctttttttttctctccattgaacacaatatattttattttaggaaaccaGTATTATAGTTTTGACagtgaacatgtcaggctaaataataaaattaaaattg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04145 Phagosome
ko04913 Ovarian steroidogenesis
ko04925 Aldosterone synthesis and secretion
ko04927 Cortisol synthesis and secretion
ko04976 Bile secretion
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption
ko05160 Hepatitis C
ko04934 Cushing syndrome
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-031126-1 Predicted to enable lipid binding activity; low-density lipoprotein particle binding activity; and scavenger receptor activity. Predicted to be involved in cholesterol transport; plasma lipoprotein particle clearance; and recognition of apoptotic cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola and cytoplasm. Is expressed in adaxial cell; segmental plate; somite; xanthophore; and yolk syncytial layer. Orthologous to human SCARB1 (scavenger receptor class B member 1).

Ensembl:

ensembl_id ENSDART00000158681

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005949 lncRNA upstream 316277 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 642432 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 675085 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005947 lncRNA upstream 761448 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 857534 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00004606 lncRNA downstream 19118 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 165337 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 392674 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 607433 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004598 mRNA upstream 5004 44692272 ~ 44694732 (+) True XLOC_002451
TCONS_00004597 mRNA upstream 7792 44677632 ~ 44691944 (+) True XLOC_002450
TCONS_00004594 mRNA upstream 27334 44581378 ~ 44672402 (+) False XLOC_002449
TCONS_00004607 mRNA downstream 63430 44811700 ~ 44897986 (+) False XLOC_002454
TCONS_00004608 mRNA downstream 75802 44824072 ~ 44901444 (+) False XLOC_002454
TCONS_00004609 mRNA downstream 87901 44836171 ~ 44897986 (+) True XLOC_002454
TCONS_00004610 mRNA downstream 155406 44903676 ~ 44914922 (+) True XLOC_002455
TCONS_00004613 mRNA downstream 176414 44924684 ~ 44939658 (+) False XLOC_002458
TCONS_00004569 other upstream 1626480 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2859703 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3950838 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 4059932 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 4089783 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004611 other downstream 159498 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 428150 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 489686 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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