RNA id: TCONS_00005949


Basic Information

Item Value
RNA id TCONS_00005949
length 2404
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_002447
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44380982 ~ 44383459 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGATTTGAGACAGAATATGGTATAAAATAGTTTAATACACAATGAGATGAGTTATGCATAATCCTTCATGACAATACATCTGGATTAATCTCAGTTCTGGAGTTCATTTCTAACAGTTCAAATAAAGCCCAGCGGCATCAAACCCACACGCTCATGCTTTCACCATTATTATTACTAAACCTTATTGCTTCAGCAGGACATGATGGATTATTAATACTGCAGAAATTATACACCTTCctgtgaacatttatttattttttatatttcccaagcgctgtttaacagagcaaggacatttttcacaatatttcctatatttCTTTTTCCGGGGAAAGTTTTTGGCTAATATAAAGTTTTGTAAAAATAACTGTGGTCAATATTTTTAACCCCATTAAGAAATTGAttcttaagcctttaaatgtcactttaagccgaaTACAAGTATCCTGAAAAAATCTAGTAAACTATTATGGGCTGTCCTCATGCCAAAGAGAAATGAAATGatttattagaaaggagttattaaagctattatgtttgaAAAATGTCTTCAAAATAATGTCAGACAGCatttcagaaatatatataaattcaattTCACAGGAAGGCGAATAAATATCTAGTGTTTAGAATGTGAAGATGTTGAGAAAATGAGTACAGTAGATTTACAGTGTGAGGAGTTGTGCATGTGTTGTTCAGCTTCACTCATCACTCATTTACAGTTGCAGTCAACTCTGACTTTAGATCATACTGGCAATAAAATATGACCCTGGAGCACAAACATAGTCATATATTGCACAGGTGTATTTGTAGCAACAGCCGACAAAACACTCAATCAGCCAAAATGATGGATTTATCTTTAATACCAAAAATCATTCAAGTAAAGATCACActtcatgaagacattttgtacatttcctactgtaaatagaTCAAAACTTCACTGTTgattagaaatatgcattgctaagaatggAATTTGATCAACCGTAAAAatgattttctaaatatttagatttttttcagattttctaATAATTTTATCCCAGTCAAATATTGTCCATCATAAACAATTCACCAATAGaaagattatttatttagtttgttgctCCAGGGTCACAAATGTAATGTTAAAGTTCAAAACTAGCTCAAAAATCTGAAAGTAACTGGCACTTTTAAACCAATACTTTTTAAAGTATCAAACTTTAAACCAATACTTTTCAAATCGATACTTTAAAACCGATACATTAAAAAGTACCAAACTTTTAAACcaatacttttaaaatttatACTGTTAAACTGACACTTCTAAAGTGATACATTTAAAAAGCATCAAACCTTTGAACCGATACTTTTTAAATCcatactttataacttatacattTAAAAGTATGGAACTTTTAAACTGATACATTTAAACTGATACTTTTGAATGTATGGAACTTTTAAACTGACTCTTTTATCCAGCAATGATCAAAGCTGTAAAACCTTTCAAAAGATTTGAAACAAATGataggggtaaagttggtttaatattcgcaTATTCAGACAATCtccttaataaaataatttcagaaaagtattctttgcaaattctaaatagggaaatcatattagcagcaaatgactatcaaagtacaacattgttcacagtgaataagatagtgttaatgctgttttaaagtcatacttgcatgctaatttcaATCGAATGTTCAACATAACATGGTAAACAATCTAGAgattctaaatgaatgaatgtgtgaatataaaaccaactttacctctataaacaAATGCTGTGGTTTTGATCTTTAAAGACTGATAATAATCCTCATAACGCTGTCTTGATCATCAAATCCTCATTTAAAACAGATTTCTAAACGTGACTGAAATTCAGTGTTTATAGTACTGTATGTTCATTTAATAAACAGCTTACATCTTTAAATGTAAGACCACCTCAGTTTCTACTGTATTTGTGATCAGGTAAATGTGGCATCGGGGAGTTTTAAAGGGAAACCTCTTCTAGAACAAAAATACTATttactttagaaaaaaatatagagTTTTCCATCAAACAAAGACTTTAAAAGGCACGTCTATGATTGAAATGCTGCATTGACGATGATTCTGTAAATCCATCTAGTGCTAGTGCTAACGCTGAGCTGAAATGAAGTGTGTGAACGTCTGCAGCAGGCCAATGCACATTCAATACTAAAGCTGTGATCTTCCTTAAAACCCTTGAGGACAAAAGTAAAGTGCAGGATCTACGCAAACACCCAAACTTTGCTAAGTGCTCATGTTTTGGCTTTGACAAATGCACATATTGcacaaagattatatatatatatatttagtgctcagcataattgagtgtTTCTCATACTGTAATAATTTCTCCA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006413 translational initiation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005948 lncRNA upstream 323678 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 356331 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005947 lncRNA upstream 442694 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 538780 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005944 lncRNA upstream 855769 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00004606 lncRNA downstream 383929 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 530148 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 757485 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 972244 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004591 mRNA upstream 2901 44373349 ~ 44378081 (+) True XLOC_002446
TCONS_00004590 mRNA upstream 7612 44363195 ~ 44373370 (+) False XLOC_002446
TCONS_00004587 mRNA upstream 182771 44057177 ~ 44198211 (+) False XLOC_002445
TCONS_00004588 mRNA upstream 182771 44057502 ~ 44198211 (+) False XLOC_002445
TCONS_00004589 mRNA upstream 191633 44146287 ~ 44189349 (+) True XLOC_002445
TCONS_00004593 mRNA downstream 53621 44437080 ~ 44444714 (+) False XLOC_002448
TCONS_00004592 mRNA downstream 53621 44437080 ~ 44444714 (+) True XLOC_002448
TCONS_00004594 mRNA downstream 197919 44581378 ~ 44672402 (+) False XLOC_002449
TCONS_00004595 mRNA downstream 201155 44584614 ~ 44672402 (+) False XLOC_002449
TCONS_00004596 mRNA downstream 258140 44641599 ~ 44672371 (+) True XLOC_002449
TCONS_00004569 other upstream 1307726 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2540949 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3632084 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 3741178 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 3771029 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 316358 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 524309 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 792961 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 854497 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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