RNA id: TCONS_00005944


Basic Information

Item Value
RNA id TCONS_00005944
length 6620
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_002439
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43518594 ~ 43525213 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cccatacagttgaatagagcgcttggacccggaagccgcttcgcgtgacgtcacacttaacaagcggattctgtttagaaatgtgttgacaaaatctgctctctgttaaacagaaattgggaaaataaacaggggggcctggaaattctgactttaactgtacatatatttcaataagtAAACGcaacgatgggctaaaaatctgtgcaAATCTGTTTATTTCTGCATGTCGGCCTACAAATGagctaataaaattattatgttaaaaaaatcagCACATCGcaaatattcaaaaataatttGGCCTTCAATTCTCTCTctgtacagttgaaggcagaattattcgcccccctttgaattttatttctatttttaaatatttcccaaatgatgtttaacagagcaagaaaactttcacagtatgtctgataatattttttctttttatttgttttatttcagctggaataaaagcagttttaaattttttaaatccattttaaaggtcaatattattagtcccttttagcagattttttttctcgatagtctacagaacaaaccatcgttatacaataacttgtcgaaccttaacctgcctagttaccctaattaacctagtgaagcctttaaatgtcactgtaagctgaataagtgtcttgaagaatatctagtcaaatattatttactgtcatcatgacaaagagaaaataaattgtaattagagatgagttattaaaactattatgactacaaatgtgttgaaaattctgcagaaattggggaaaaaataggcaggggtctaataattctgacgtcaactgtatataaatatgcataaatgcAAGCTTAAAATATTGTCAGCACACAAATCGAGAATTTAATACGTTTCTTCTCTTCTCTCTATTCCTCTTCTTTATTTTCCACAGCCAAAGACAcctgttttggttttttttgttCTCTACTCTGCTTCATTCAAAGCATTTAGTCTCCTGCTTAACCCAGCACTTTAAGCACACAGTGAGGGGGATGATTGCATCACAAAGGAAAGCACCAAGTCCATACCCCTATTTTGGCTTTGCAATTTGCATGCATTTGCATGATTTTATTATGCACATGCCTTTTGTTCCCTGGGTGGGAaccatggagaaaaaaaaaaaaagacggaGCCCGTGCAAACCAAACCCACTTCAACAAATATACAGTCAGACGACAGATTTTCTAATGAAAGCTGAGCTGCTAATAACTGCACAGCGCTGCATATTCAACACCAAATGAGCTactgcaacaaaacaaatgagaatgcattattttctaattgaTAAATGCATGAATTCTtgtattattatcactatttctacacacacacacacacacacacacagatgctttGGGCTTCACACAGTCGCTGCTTCattattataatcataatatCAGATCATTATTAGCGTCCGGCATCGCTGAGAACTTCCTAATGGAACAGTCCAATTCCACTGACGTGATTTGAAGAAATAGGTCAGGGGTTTAATGTTGCCTTCGGCCTGGTTTTCTAaagcacgctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacaccgcgagTCTGAACATTTCCTCCGAATTAATTCTTGTCATGcaacattttctctttgtatCAGAGACAAAACGAGAAGCTCTCATATGCATTGTTAATTCTTTCATAAACATTTGCTCCAGCGCTGTTTAATAGAGAGAGgatttattttcaacacatttttagccgtgatatttctaaaaactgatttattttgtaacGATGacagcagtggcgcagtaggtagtgctgtcgcctcaccgcaagaaggtcgctggttcgagcttcggctgggtcagttggcgtttctgtgtggagtttgcatcttctcccagtatttgcatgggtttcctctgggtgctccggtttcccccagtccaaacacatgcggtacaggggaattgatgaactaaattggccgtagtgtatgagtgtgtgtggttgagtgtgtaagggcatccgctgcataaaacatatgctggataagttggtggttcattccgctgtggcgacccctgatgaataaagggactaagccaaaaagaaaatgaatgtatgtttgTACGTctttgtggttgtgtgtgtgtgtgtgtgttcacgtcTCTTTTTCTGCCCTCTGGCTCTCCACTCACCTCATGTTGCATCAGCCTGATGAGCAGTGCTGCCTTCACATCTTCCTGCAGGccactggacacacacacacacacacacacacacacacacacacacacacacacacacacacggagagaCACACATACCGTACATTAAACACACAATAAAGGCTCACTGTTGTGTCTACTATTCTGTTGGATTCACCAAATAcgagctacactgcaaaaaagagagttttagtcttgtttctagtccaaatatctaaagattcttaAGTCAAGAAGCATTATCTAGCAAGCAAACCATATTGTGCTGTTTTAAGAAGTAAtgagccaaaattaagtgagtttctccttgaaacaagcacaataatctgTAAGGGAGCAGGTTAAAATAACCTtttcaccccattggcagattattgtgcttgtCATAAAGAAAATAAcccaacatttattttaaagagtaaATAATGACGAGCTCAGCCTCTCAGGAAATGTGTGCATCTGTCGGACATTTATattcaaacatttaaaatttcattCAATGCGTTTGGTCTCAGTTCAGATGCTGAGAACTGACTCACTCAGAACATTCTGCTTTATCAACCACTCAttcaaccactcagaacattcTGCTTTATCTACAACACACACTCTAAAACATGCCGGGCTGTTGTAACCCAATATATGGGTCAAAAATAGACAAAACCGACCATGTGGTTTAAAAGTGAACTTAAAAATTAaccatttattgatttattttccttcggcttagtcacttatttaacatgggtcgcaacagcggaatgaaccgccaactattacagcatatgttttacacagcggatgcccttccagctgcaacccagtactgggaaacacccatacacacacgcacacacacacacacacacacacacacacatatacacacacaatatggccaatgtagttcatcaattcccctatagcgcatgtgtttggactgtgggggaaaacggagcacctggaagaaactcacgccaacatgtggagaacatgcaaactccacacagaaatgacaactgacccagccgggacttgaaccagcgaccttcttgctgtgaggcaacagtgctaaccactgagccaccgtgccacccaaaaTTAACaattatacttaaaaataaaacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtcaatttttgacccagcattgggttaaaTCAACCCAGCATTTGATTCAGTATATAATGATGAGCTCAGCTTCTCAGTTAATGTGTGCATCTGTTTATCAAACTGAATTCAATTCTGATGGTCTCAGTTCAGGCATTGAGCTTTGAACCTATAACCTACAGAACATTCTGCTTCATCTACAccacacactctaaaaaaatgctgggttgatgGAACCCACGTTGAGtcaaaaatacacaaacccaaccatgtggctaaaaagttaacttaaaaatttaatagaaaaaaaaaacattctctcaaaaaaaaaaaaaacatgctgtttttGACCCAGAATTGGGTTAAaccaacccagcatttttttttttaaaagagtacatctgtcagatgcattttgatacAAACATCAAAAGTTTAATTCAATGCGTTTGGTCTCAGTTCAGGCCATGAGTTTGGAGCATTAACCTACAGAACATTCTGCTTTATCTACAACACACACTCTAAAACATGCCGGGCTGTTGTACCCCATATTTGGGTCAGAAATTGACTGAACCAACCATGTGGTTAAAAAGTgtacttacatttttaatttacatcccactcttttttttaatgatggattATTTGTACACTTTTAACCCAATGTTAGTAAAGAGAATATAATGATGGGCTCTAAAATTTTATTGCCATTACAGTAAAgctgggttgttgtttttttaattaattaatttatttttttgacccAGCATTAGTTTGAAACATCActgcatttctttttcttttttttttttttttgtcatggaatTTTATTCTTGCAAATAGCATTTAACATATTATAACAACCCACAAAACAATacccaaataaaacaatcaacatctgcaaatgaataaataaataaataaaataaacaaaataataataaataaaataaatacaaatacaaagaaaaaaaattataacaaaacatGTACAaacgtacacacatacacatgtaccTTCACTCAATACACATCTAAGGTTTTTGCGTGACTATAGAATACAATAAATTGttgccatttttcaaaataattttctcCTCTACCTctgatattgtatttaattttctaaagttttaaaaagaagaccAAATCTTTGAGCCATAATGAAATAGAGGGGGGTTGTGAAGAGGTCCAAGACAACGGTACTCTGCGCCTAGCAAGAAGAGAGGCAAAAGCCACAATGTCAGCGTGTCTCCGGTCTAAAGGTCGACACTGAGAGGGAACACCAAAGATTAAAGGGCAAACAGTTAACTTGACCCACAGAATATCAGAAACAATTTTCAAGAAAGCAATCCAATAATTTTGCAACTTGGgacaaaatacaaacatatgactAAGGTTACATGATGAAAGCTTACATTAATCGCACATATCTAAAACATTAGGATAGATTTTAGAAAGTTTGGCATTTGAGAGATGAGACTGCATTTCTTTAAGAATAAATAATGTTGAAGTCATTAAATATGTGCATCTCTCTGACATTTTTATTATCTCAGTTTAGGTGATGAGCTTTTTTTGTTTACACCATACACTaaacaatgctgggttgttgtaacccaatgttgggtcaaaaatggacaaaccGAACTATGTGGTTAAAAAGTgtacttacatttttaatttacatcccactcttttttttcccttttttttaatgatggattATTTGTACActtttgacccaatgttgggttaaatcaacccagcattttatttaaagagaaTATAATGATGAGCTCTACAATTCTATTGtcatttttttaccattttagcaaaaaaaaaaagctgggttgtttgtttatttttgacccAGCATTGGTTTAAAACATCACTGCATTTCTTTAGGAGTAAATAATGGTGTAGTCATTAAGTGTGTGCATCTGTCTGACATTTTTGATCATCTCAGTTCAGGTAATGAGGTAATTCAGGTAACAATGCTGGGCTGCAGGACTCCTGCATCTGTTACAGTGTACACTTTACCACACAATTATTAATGttgatttttgcataacaggtTGTCTTTAACGTTACAAATGTTTGTGCCTGAACGCTTTAAACTCTCTTTAAACACAATCAAATGATCAAGTTTCACCCTGTTATGGTCAAACTTTGCAATGACTCTCATGTGTTCTCAATtgttgatcaactataatcccaactcaacgcTCCTCCTGAGGCTCTCTGTGGGGCTTATTCTCCTTTTCACTTGTGATTTGACTGCCAGTATTACAATATGATCTTTTAATGCTGTGCTTTTATAACAATACCGCACTCATCGTCATATACGAGACTGTCAACATGTTCAGAATTGTGCTAGACGTTAAACCCCCTGCTCTGATGTTAACACACTAACAAATGCTTTCAACTGCAGGCCAAAAAACGACATATTTGCTTGAAACGCGTCCAATCGGAGCACTGAGTTCATCAACAAAGCGTCTCTCCTGAGGATCTGCATGCGGAGTCGTTAGCACCAATCACAGGCCAGAGCTCAGCGTGCCAAACCAATGAGAACGCTGCTAATTAGAAAATTGGTATTCATGGTAACGGGCAGCCATTGTGCTGTGACATATGCAAAgcatgtgcacgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgccagcagACATTTTGGGATTGCCCTCTCAGTCTCCACTGCCATAGCCATAAGATGGTGGCAGACAGCAGCACTGGGTGACGCTGGACAGTGGTGTGTGTTTGGAGATGCCCATCAGCTGAGGCTGGAGGAAAACTGTGTGCTTCTATGATTAAACTCATGCATGTTTTTACAAAGCAGTTCtgcagtcagacacacacacacacacacacacacacacacacacacacacacacaccttttgaTTCTCACATTCTGTCCGCATGCACAGATatacaaaagtaaataataaaaaaagcaatgctgggttatttcatgacatcaaatattgacaaacccaAATGTTGGGTTATATTTGGTGCAAAAAAAAGCCCAGTGGTTGGCTTTGTCCATGTTTGACACATAATtgaacaacccagcattttcgTAAAATGTATACCttgatgtatttaaatatttatt

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0008380 RNA splicing biological_process
GO:0000280 nuclear division biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004580 lncRNA upstream 76538 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005943 lncRNA upstream 697688 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 773014 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005942 lncRNA upstream 786600 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005941 lncRNA upstream 795373 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005946 lncRNA downstream 303114 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005947 lncRNA downstream 303114 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00004582 lncRNA downstream 468139 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005948 lncRNA downstream 530536 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005949 lncRNA downstream 855769 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00004579 mRNA upstream 68006 43406919 ~ 43450588 (+) False XLOC_002438
TCONS_00004578 mRNA upstream 69598 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004577 mRNA upstream 69598 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004576 mRNA upstream 69598 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004575 mRNA upstream 254709 43189325 ~ 43263885 (+) True XLOC_002437
TCONS_00004581 mRNA downstream 271917 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004583 mRNA downstream 469258 43994471 ~ 43996117 (+) False XLOC_002443
TCONS_00004584 mRNA downstream 469357 43994570 ~ 43995230 (+) True XLOC_002443
TCONS_00004586 mRNA downstream 516820 44042033 ~ 44051808 (+) False XLOC_002444
TCONS_00004585 mRNA downstream 516820 44042033 ~ 44051808 (+) True XLOC_002444
TCONS_00004569 other upstream 445338 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 1678561 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 2769696 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 2878790 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 2908641 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 1174604 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1382555 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1651207 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1712743 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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