XLOC_002398 (BX001050.2)


Basic Information

Item Value
gene id XLOC_002398
gene name BX001050.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40747873 ~ 40748898 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004521
AACAAACTCCTAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGAGAGACGCTCCAGTCATGGATATATCATCACATATTTGTTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGCTAATTGGACTGTTTGTGATACCGATACAGGCCATTAAGCTGATTGAGACGTGTTGGTACTTTGGAGAAACTTTCTGTGGACTTTATTTGTCATTAATTTTTGAGCTTGCCTCAGCATCTCTtagtaatttagttttattagcTGTTGATCGATATGTTGCTGTGTGTCACCCTTTACTATACCCACAGAAAATAACCACCACTAAAACATTAATGAGCATCTGTCTGAGCTGGGTTTGCTACTCAGCTTATAACACTgcccttataattaataatagataTTCTGACACTTCGCACAGAACAGATGAGTGTTATGGACGGTGTTTCATTGTGATGAGTTTTAGCTGGCTAGTCACTGATCTGTTCATGTGTTTTATTCTTCCCTGTATCATAATGATCACTTTATATTTAAGGATTTTCTATGTAGTACATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACAAAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGACCATATATTTGCTTTGCTatatcccatactatatctgttcTCTAGTCGTAAACTCTTCCACAGCTATACATGTTATGTCATGGACCATGTATGCTAACTAAGGTCTGAATCCTCtggtttatgctttattttatccctggtttaaaaaaacagctaaactCATATTTACTCGGAAAATATTTCAGCCGGCATCCTCTCTGATCAATATTTTTACAGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004521 True 1026 unprocessed_pseudogene 0.38 1 40747873 40748898

Neighbor

gene id symbol gene type direction distance location
XLOC_002397 taar19e coding upstream 4127 40742685 ~ 40743746 (+)
XLOC_002396 taar19a coding upstream 9308 40737540 ~ 40738565 (+)
XLOC_002395 taar19i coding upstream 14978 40731834 ~ 40732895 (+)
XLOC_002394 taar19q coding upstream 24586 40722256 ~ 40723287 (+)
XLOC_002393 si:ch211-139n6.11 coding upstream 35556 40711286 ~ 40712317 (+)
XLOC_002399 taar19o coding downstream 7454 40756352 ~ 40757389 (+)
XLOC_002400 taar19g coding downstream 13302 40762200 ~ 40763234 (+)
XLOC_002401 taar19d coding downstream 19305 40768203 ~ 40769264 (+)
XLOC_002402 taar19b coding downstream 25317 40774215 ~ 40775243 (+)
XLOC_002403 taar19c coding downstream 32154 40781052 ~ 40782113 (+)
XLOC_002380 CR396590.1 non-coding upstream 108069 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 137920 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 139156 40607701 ~ 40608717 (+)
XLOC_002373 CR396590.8 non-coding upstream 147371 40599935 ~ 40600502 (+)
XLOC_002367 CR396590.5 non-coding upstream 192742 40554917 ~ 40555131 (+)
XLOC_002406 CU571179.1 non-coding downstream 190766 40939664 ~ 40964812 (+)
XLOC_002414 BX005006.1 non-coding downstream 1091021 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1234099 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1721718 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 1971943 42720841 ~ 42723221 (+)
XLOC_002391 taar19n coding upstream 19180 40700311 ~ 40728693 (+)

Expression


Co-expression Network