XLOC_002466 (ogdhb)


Basic Information

Item Value
gene id XLOC_002466
gene name ogdhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45148005 ~ 45205893 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004626
GTTCACCTAAAGAACAACAAtatgcgctagcaaaataaacattgtaaaatttGATTTCACACGGACTTTAAAAGACTTTTGTCCACTCCGCCTTCCATGTTTTTTTGTCCCTATCAGCGCTCCATAATGAGCTCGTGACGTCGCGCGCGCCGGTGACGCAGAACTGCAGGCTCGCGCTGCTTAGAAACGAGCGACTCATTTACCTGGACTGAAGCCGCCGCGAGACGCACCCGCTCCCAAAATATCACTATTTCCCTCTTAGTAATCATCTTTTATATCACTATACTGCACTGACTAGAGTCTGCTGCACTGAGATTTCCTGGGACGAGCAGGACTTCAGTGGGGTAAAGGAGTTCAAGCACTTTCATTAGAGGAATACGTCCAGGATCTGTTGGATTTTGGGAGTTTTTGTTCTGCTGTTGGTTTGGCGAGGCGGTGGAGCTGTTTTAAAGACTGCGATGCATCGCTTAAGGACTTGCGCTGCTCGACTGCGGCCGCTCACAGCCTCTCAGAACGCTGCTAGTTTCTCACAACACAGGCCGGCGGTGGTGCACGGGGCCCGGAGGACGTTTCAGCCAATCAGGAACTACACGGCCCCTGTCACCGCCGAGCCTTTTCTCAATGGGACGAGCTCCAACTATTTGGAGGAGATGTATTACGCATGGCTGGAGGATCCCAAGAGCGTGCACAAGTCGTGGGACATCTTCTTCCGTAACGCTAACGCTGGCGTGGCTCCAGGTTCTGCCTACCAAAGTGTTCCTCCAATGGGGCTCTCAGGACTCTCTCAGTCGCAGGCGCTGATTGGAGCACAGCCCAATGTGGAGAAACTAGTGGAAGACCACCTGGCTGTGCAGTCCCTCATCAGAGCATATCAGATTCGCGGACACCACGTAGCGCAGCTGGATCCTCTGGGCATTTTGGATGCAGATCTCGATTCGTGCGTCCCTGCTGATATAATCACGTCCTCTGATAAACTCGGCTTCTACGGGCTGGAAGAAACGGATCTGGATAAAGTTTTCCGGCTTCCCACCACCACCTTCATCGGGGGCAGCGAAACTGCGCTTCCTCTCAGGGAAATCATTCACCGCTTAGagATGGCCTACTGTCAGCACATTGGTGTGGAATTCATGTTCATCAATGATCTGGAGCAGTGCCAGTGGATCCGGCAGAAGTTTGAGAAGCCCGGAGTGATGCAGTTTACTCTGGATGAGAAGAGGACACTGCTGGCCCGTATGGTGCGCTCCACCAGGTTTGAGGAGTTCCTGCAGAGGAAGTGGTCATCAGAGAAGCGTTTCGGCCTGGAGGGATGCGAATCTCTCATTCCTGCGCTCAAAACCATCATCGACAAATCCAGTGAGAACGGCGTGGAGAATGTCATCATGGGGATGCCGCACAGAGGCCGTCTGAATGTTCTTGCTAATGTGATCCGTAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCCAAGCTGGAAGCAGCAGACGAGGGCTCCGGTGATGTGAAGTATCATCTGGGCATGTACCACAGACGCATCAACCGCGTCACTGAGCGTCAGATCACACTGTCTCTGGTGGCCAATCCTTCACATCTGGAGGCTGTGGATCCTGTGGTGCAGGGAAAGACCAAGGCGGAGCAGTTCTACTGCGGGGACACAGACGGAAACAGGGTGATGTCCATCCTTCTGCATGGAGACGCAGCCTTCGCCGGTCAGGGAATCGTCTACGAGACTTTCCACCTGAGCGACCTGCCCTCATACACCACACACGGCACCATACATGTGGTCGCAAACAACCAGATCGGCTTCACGACGGACCCCCGTATGGCGCGCTCCTCGCCGTACCCCACCGATGTGGCCCGAGTGGTGAATGCACCCATCTTCCATGTGAACGCAGATGACCCGGAGGCCGTGATGTACGTGTGTAACGTGGCTGCAGAGTGGAGAGCCACCTTTCATAAAGACGTGGTGGTGGATCTGGTGTCCTACAGACGGAACGGCCACAACGAGATGGACGAGCCCATGTTTACTCAACCGCTGATGTACAAACAGATCAAGAAGCAGAAACCTGTTCTGCAGAAATATGCGGAGAAGCTGATCGCAGAAGGAGCTGTGACCAGACAGGAATACGAGGAGGAAATCTCCAAGTATGATAAGATCTGTGAGGAGGCGTACAATCGCTCGAAAGACGAGAAGATCATGCACATCAAACACTGGCTCGACTCACCttggccagGTTTCTTCACTCTGGATGGTCAGCCGAAGACCATGAGCTGTCCGTCCACTGGCCTCAGTGAGGAAACTCTGGCGCACATCGGGCAGACGGCTTCATCCGTTCCTGTGGAGGATTTCACTATAcatggagGTCTGAGCCGTATCTTGAAGAGCCGGTCGCTGATGGTGCAGAACCGCTCTGTGGACTGGGCTCTGGGCGAATATATGGCGTTCGGTTCGCTGCTGAAGGAGGGCATTCATGTGCGGCTCAGCGGGCAGGACGTGGAAAGAGGAACATTCAGTCATCGGCATCACGTACTCCACGATCAGAATGTGGACAAGCGGACCTGCATCCCTATGAACTACATGGACCCTAACCAGGCGCCCTACACAGTGTGCAACAGCTCTCTGTCAGAATATGGAGTTCTCGGTTTTGAGCTTGGCTTTGCTATGGCGAGTCCGAATGCTCTGGTGCTCTGGGAGGCTCAGTTTGGGGATTTCCACAACACTGCGCAGTGCATTATTGACCAGTTCATCTGCCCCGGCCAGGCCAAATGGGTTCGGCAGAACGGCATCGTGCTGCTGCTGCCACACGGCATGGAGGGCATGGGCCCGGAGCACTCATCCGCCCGGCCTGAGAGATTCCTGCAGATGTGCAATGATGATCCTGATGTTTTCCCGCTCATCATCTTCACACCGAAATCTCTGCTGCGCCACCCAGAGGCCAAGTCCAGCTTCGAGGAGATGCTGCCTGGCACACACTTCAGCCGGCTGATCCCAGAGCAGGGCAGTGCGTCTCAGAGCGCAGCAGGCGTTCAGCATCTGATCTTCTGCACTGGGAAAGTGTTTTATGATCTGCAGCGAGAGAGGAAGAGTCGAGGCCTGGAGGAGCGCGTGGCCATCAGCCGCATCGAGCAGCTCTCTCCGTTCCCGTTTGACCTGGTGAAAGCGGAGGCTGAGAAGTATCCGCATGCGCATCTGCTCTGGTGTCAGGAGGAGCACAAGAATCAGGGATATTATGATTATGTCAAGCCCCGCATCAGCACCACCCTCAACAACACCCGTCCTGTCTGgTATGTGGGCCGAGATCCAGCTGCTGCTCCAGCTACAGGAAACAAGAAGGCTCATCTGCTGGAGCTGCAGCGCTTTCTAGACACGGCGTTCAACCTGGAGGCTTTCCAGAGCGCGTcataa
>TCONS_00004627
ACTGCAGGCTCGCGCTGCTTAGAAACGAGCGACTCATTTACCTGGACTGAAGCCGCCGCGAGACGCACCCGCTCCCAAAATATCACTATTTCCCTCTTAGTAATCATCTTTTATATCACTATACTGCACTGACTAGAGTCTGCTGCACTGAGATTTCCTGGGACGAGCAGGACTTCAGTGGGGTAAAGGAGTTCAAGCACTTTCATTAGAGGAATACGTCCAGGATCTGTTGGATTTTGGGAGTTTTTGTTCTGCTGTTGGTTTGGCGAGGCGGTGGAGCTGTTTTAAAGACTGCGATGCATCGCTTAAGGACTTGCGCTGCTCGACTGCGGCCGCTCACAGCCTCTCAGAACGCTGCTAGTTTCTCACAACACAGGCCGGCGGTGGTGCACGGGGCCCGGAGGACGTTTCAGCCAATCAGGAACTACACGGCCCCTGTCACCGCCGAGCCTTTTCTCAATGGGACGAGCTCCAACTATTTGGAGGAGATGTATTACGCATGGCTGGAGGATCCCAAGAGCGTGCACAAGTCGTGGGACATCTTCTTCCGTAACGCTAACGCTGGCGTGGCTCCAGGTTCTGCCTACCAAAGTGTTCCTCCAATGGGGCTCTCAGGACTCTCTCAGTCGCAGGCGCTGATTGGAGCACAGCCCAATGTGGAGAAACTAGTGGAAGACCACCTGGCTGTGCAGTCCCTCATCAGAGCATATCAGATTCGCGGACACCACGTAGCGCAGCTGGATCCTCTGGGCATTTTGGATGCAGATCTCGATTCGTGCGTCCCTGCTGATATAATCACGTCCTCTGATAAACTCGGCTTCTACGGGCTGGAAGAAACGGATCTGGATAAAGTTTTCCGGCTTCCCACCACCACCTTCATCGGGGGCAGCGAAACTGCGCTTCCTCTCAGGGAAATCATTCACCGCTTAGagATGGCCTACTGTCAGCACATTGGTGTGGAATTCATGTTCATCAATGATCTGGAGCAGTGCCAGTGGATCCGGCAGAAGTTTGAGAAGCCCGGAGTGATGCAGTTTACTCTGGATGAGAAGAGGACACTGCTGGCCCGTATGGTGCGCTCCACCAGGTTTGAGGAGTTCCTGCAGAGGAAGTGGTCATCAGAGAAGCGTTTCGGCCTGGAGGGATGCGAATCTCTCATTCCTGCGCTCAAAACCATCATCGACAAATCCAGTGAGAACGGCGTGGAGAATGTCATCATGGGGATGCCGCACAGAGGCCGTCTGAATGTTCTTGCTAATGTGATCCGTAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCCAAGCTGGAAGCAGCAGACGAGGGCTCCGGTGATGTGAAGTATCATCTGGGCATGTACCACAGACGCATCAACCGCGTCACTGAGCGTCAGATCACACTGTCTCTGGTGGCCAATCCTTCACATCTGGAGGCTGTGGATCCTGTGGTGCAGGGAAAGACCAAGGCGGAGCAGTTCTACTGCGGGGACACAGACGGAAACAGGGTGATGTCCATCCTTCTGCATGGAGACGCAGCCTTCGCCGGTCAGGGAATCGTCTACGAGACTTTCCACCTGAGCGACCTGCCCTCATACACCACACACGGCACCATACATGTGGTCGCAAACAACCAGATCGGCTTCACGACGGACCCCCGTATGGCGCGCTCCTCGCCGTACCCCACCGATGTGGCCCGAGTGGTGAATGCACCCATCTTCCATGTGAACGCAGATGACCCGGAGGCCGTGATGTACGTGTGTAACGTGGCTGCAGAGTGGAGAGCCACCTTTCATAAAGACGTGGTGGTGGATCTGGTGTCCTACAGACGGAACGGCCACAACGAGATGGACGAGCCCATGTTTACTCAACCGCTGATGTACAAACAGATCAAGAAGCAGAAACCTGTTCTGCAGAAATATGCGGAGAAGCTGATCGCAGAAGGAGCTGTGACCAGACAGGAATACGAGGAGGAAATCTCCAAGTATGATAAGATCTGTGAGGAGGCGTACAATCGCTCGAAAGACGAGAAGATCATGCACATCAAACACTGGCTCGACTCACCttggccagGTTTCTTCACTCTGGATGGTCAGCCGAAGACCATGAGCTGTCCGTCCACTGGCCTCAGTGAGGAAACTCTGGCGCACATCGGGCAGACGGCTTCATCCGTTCCTGTGGAGGATTTCACTATAcatggagGTCTGAGCCGTATCTTGAAGAGCCGGTCGCTGATGGTGCAGAACCGCTCTGTGGACTGGGCTCTGGGCGAATATATGGCGTTCGGTTCGCTGCTGAAGGAGGGCATTCATGTGCGGCTCAGCGGGCAGGACGTGGAAAGAGGAACATTCAGTCATCGGCATCACGTACTCCACGATCAGAATGTGGACAAGCGGACCTGCATCCCTATGAACTACATGGACCCTAACCAGGCGCCCTACACAGTGTGCAACAGCTCTCTGTCAGAATATGGAGTTCTCGGTTTTGAGCTTGGCTTTGCTATGGCGAGTCCGAATGCTCTGGTGCTCTGGGAGGCTCAGTTTGGGGATTTCCACAACACTGCGCAGTGCATTATTGACCAGTTCATCTGCCCCGGCCAGGCCAAATGGGTTCGGCAGAACGGCATCGTGCTGCTGCTGCCACACGGCATGGAGGGCATGGGCCCGGAGCACTCATCCGCCCGGCCTGAGAGATTCCTGCAGATGTGCAATGATGATCCTGATGTTTTCCCGAAAATCACGGAGGACTTTGCGGTCCGGCAGCTGTATGACTGTAACTGGATCGTGGTGAACTGCTCCACTCCTGCAAACTACTTCCACGTGCTGCGCAGACAGATCCTGCTGCCCTTCAGAAAACCACTCATCATCTTCACACCGAAATCTCTGCTGCGCCACCCAGAGGCCAAGTCCAGCTTCGAGGAGATGCTGCCTGGCACACACTTCAGCCGGCTGATCCCAGAGCAGGGCAGTGCGTCTCAGAGCGCAGCAGGCGTTCAGCATCTGATCTTCTGCACTGGGAAAGTGTTTTATGATCTGCAGCGAGAGAGGAAGAGTCGAGGCCTGGAGGAGCGCGTGGCCATCAGCCGCATCGAGCAGCTCTCTCCGTTCCCGTTTGACCTGGTGAAAGCGGAGGCTGAGAAGTATCCGCATGCGCATCTGCTCTGGTGTCAGGAGGAGCACAAGAATCAGGGATATTATGATTATGTCAAGCCCCGCATCAGCACCACCCTCAACAACACCCGTCCTGTCTGgTATGTGGGCCGAGATCCAGCTGCTGCTCCAGCTACAGGAAACAAGAAGGCTCATCTGCTGGAGCTGCAGCGCTTTCTAGACACGGCGTTCAACCTGGAGGCTTTCCAGAGCGCGTcataacagcacacacacacacacacctccgtcCCGCAAACACACTCGATATTAGCATCAGAAGGCAAGCTGGCAGCTATTGAGAATAAAGCACTGTAGTCTATGCAGAATCTCCCGCAAGCTTTAACTGCTCCAGGATCAGTGTTCCTGCATGATCTGAGGGAAGGCATGCTGATGGAGGCCTGAAATAATGCTCAGATTCAACCACAGGTTCCCCTTCAGGACGACATCAAGGGTCAGTTCACGCAAATATGAACATGtcctgttcatttactcacccacaagtGATCCAAGAGGAGTTTTATTCCTTCAGTTGGACATTAGAGAAGATTTGGAGCTGAATGTGTGGCGATTAGTGattataatggcagtgaatgctCACAGgttatttagattaaaaataaacacaaataaatgagtTCAAAACAATCGTCACGGCTCCTGATGACACACTAAGCTCTTCTGAAGCTGAACAGTCACTCTGTGTAtagaaattgaacattatttacaatattatgagctataataattattattaactatattattaactatatttgtatatattgaCGCGGCGGCTCAGTGGCTGGCGCTGCTGACTCGCAGCGGGAGGGCCAATCGTTCAAGTTCTAATTGAGCCAGTCGGCACTCTCTgcgcagagtttgcatgttctccccgtgttccctgggtactctggtttcctcccacagtctaaaaacaagtGACATAAGCAAATTGTAATAGTCACAAGCACCTAACGCATACATACTGAATCCATTCTTATAGATCCACTTCTTTAATCAAAGTTGGAAAAAACAAACTGGGGCTCTGGAGAAAAACCCGTGTCCCTCCTAATGATCCAGGCCGGACCCTAGGGCTCatctatctccaagctcagggttctctcctgggacagcatgccaaacctgctactATAGtcgagcattatctaagtgtgaactcttgaaagctgATAATAtcgtaaataatgtttaatttttcaCTCGTTTGCCTTCACAAGGCCTCAGTGTGCATCAGGAGCTGTTGATTTGAACTTGTCTGTGTgtggttatttattatttttctaagtgtttgtattagttttacatttttcaatagtttccaaacaacacaacaaataagCAGAATAATACAGAGAAAATAATGAacgttaaaataaataaaaccaattacttattcattttcttttcagcttagtccctttattaatctggggtcaccacagcggaacgaaccaccaacttatccagcatatacagTATGGTCACCTTAGAaatataaggttttatctgacatttttgtcaaaattgagttattgaattCTTATTAAATTACATCTTATTGACATTATGGGaggttttttataagttgtttacattttactttttatttaaataaacaaatgttctacacacactgtttgctatagaatgcaaaaactgCGAAGCTCAAcatcttaaaatcattcagaacgcagagagaaACTCATAATGCCACACTGCcaaaactgcttttcttacttgattattttttgtcttgtttctgctccaaatatctacaaatttctaaatcaagaagcattttctagaaaagcaaaacatatcgtcttgttttaagaaataatatgccaatatcaTGTGTTTCcttaaataaagctaaataatctgccaatggggtgagcaaaatgatcttgtttttcaatttgtgataagatcattttaatatattaatatattaatataatatttaatatattaatatattaatataaatatatattgatatgttttgcttttaagaatttgtagatatttggagcagaaacaagacaaaaaaaatctaagtaagaaaagcagttttgGCAGTGCAACCATTTAATTCTCactgtacactacggacaatttagcctacccatgtcacctgtaccgcatgtctttggactgtgggggaaacagagcacccagaggaaacccaaacgaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagtgagctTCTAGCTGTggcgattgtgctaaccactgcgccaccgttacacccaattaaattattaatgaaacAATTAAAGCACACAGTGTAAACGCTTTTAATGAAAATACAGGGGCAGTGAACATATTAAGCATGTTCAGAATCCGCAGTGTGTGTTTATCTTTAATCTAGTAAACCggtcaccattcactgccattacaATCACCAAACACCACAGATTCATCTCTGCTTTAATGTTCAGCTGAAGATAAATCTGATCCTATATCTTGGATGATTGTAAGTAAATGAACAGGAAAtgtgcatttttgggtgaactgaccctttaataatTGCATTGAGTATGCACAGAAGTGCTTGGCATGGACGTCTCATGCATGGACTGGATGCGTTTTAAACTACTGTGAAAGGATTATCCATCATCAAGCCTGCGTTTAAGTTTTATAATCTAGAAGAAAGTTTTAAACACCGTGCCAAATTACCATGAACTGCAGTCTGCGACTCCAAGCTGAAACAATCACTGTATCCTGTTTTAATTCAAGACAGACACGCGTACGCTCTCAGCAAAGACTTAaagggtttatttattttcatagatttcTGATTATTCcagacttcaaaataaaagcatctCCGTTTCA
>TCONS_00004628
GTTCTTGCTAATGTGATCCGTAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCCAAGCTGGAAGCAGCAGACGAGGTGAGACAAACAGCCAGCGTTTCTCTTCAATTCCCTCAAACAGGGAAGCCGATTTCTGCCACAGAATCAAACAAATAGgCACAATATTTACagactcatctgttattctgtctTCAGCTCAAagagattttagcttcaactgcACATTCGATTTCCATCTATCTGTCATCTGTCAAGAGACGCCCCTTTTTGCCAATTGGCCAACATAGTAGTTTATGTTGTAGGGGTTGCACAGCCTAGTCAACTTTAATGCTCTGCCATGACactttttgtgaagtttatttataaactaatgtcgagaggatcacgtgcttatgattgcttgcagctggtcct

Function

symbol description
ogdhb Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity. Acts upstream of or within heart contraction. Predicted to be part of oxoglutarate dehydrogenase complex. Predicted to be active in mitochondrion. Orthologous to human OGDH (oxoglutarate dehydrogenase).

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0060047 heart contraction biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-8 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity. Acts upstream of or within heart contraction. Predicted to be part of oxoglutarate dehydrogenase complex. Predicted to be active in mitochondrion. Orthologous to human OGDH (oxoglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000103428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004626 False 3404 mRNA 0.54 22 45148005 45203196
TCONS_00004627 False 6065 mRNA 0.47 23 45148167 45205893
TCONS_00004628 True 414 processed_transcript 0.43 2 45176420 45176924

Neighbor

gene id symbol gene type direction distance location
XLOC_002465 NA coding upstream 2868 45140944 ~ 45145137 (+)
XLOC_002464 camk2b2 coding upstream 13424 45071603 ~ 45134581 (+)
XLOC_002463 nudcd3 coding upstream 77823 45059702 ~ 45070182 (+)
XLOC_002462 gnsb coding upstream 100763 45031398 ~ 45047242 (+)
XLOC_002461 h2az2b coding upstream 149553 44984946 ~ 44998452 (+)
XLOC_002467 CT956056.1 coding downstream 32063 45237956 ~ 45238042 (+)
XLOC_002468 zmiz2 coding downstream 42433 45248326 ~ 45341821 (+)
XLOC_002469 ppiab coding downstream 139681 45345574 ~ 45352279 (+)
XLOC_002470 NA coding downstream 149810 45355703 ~ 45356324 (+)
XLOC_002457 NA non-coding upstream 230606 44913607 ~ 44917399 (+)
XLOC_002456 BX569788.2 non-coding upstream 240122 44907768 ~ 44907883 (+)
XLOC_002453 BX569788.1 non-coding upstream 378484 44767388 ~ 44769521 (+)
XLOC_002447 NA non-coding upstream 764546 44380982 ~ 44383459 (+)

Expression


Co-expression Network