RNA id: TCONS_00004627


Basic Information

Item Value
RNA id TCONS_00004627
length 6065
RNA type mRNA
GC content 0.47
exon number 23
gene id XLOC_002466
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45148005 ~ 45205893 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCAGGCTCGCGCTGCTTAGAAACGAGCGACTCATTTACCTGGACTGAAGCCGCCGCGAGACGCACCCGCTCCCAAAATATCACTATTTCCCTCTTAGTAATCATCTTTTATATCACTATACTGCACTGACTAGAGTCTGCTGCACTGAGATTTCCTGGGACGAGCAGGACTTCAGTGGGGTAAAGGAGTTCAAGCACTTTCATTAGAGGAATACGTCCAGGATCTGTTGGATTTTGGGAGTTTTTGTTCTGCTGTTGGTTTGGCGAGGCGGTGGAGCTGTTTTAAAGACTGCGATGCATCGCTTAAGGACTTGCGCTGCTCGACTGCGGCCGCTCACAGCCTCTCAGAACGCTGCTAGTTTCTCACAACACAGGCCGGCGGTGGTGCACGGGGCCCGGAGGACGTTTCAGCCAATCAGGAACTACACGGCCCCTGTCACCGCCGAGCCTTTTCTCAATGGGACGAGCTCCAACTATTTGGAGGAGATGTATTACGCATGGCTGGAGGATCCCAAGAGCGTGCACAAGTCGTGGGACATCTTCTTCCGTAACGCTAACGCTGGCGTGGCTCCAGGTTCTGCCTACCAAAGTGTTCCTCCAATGGGGCTCTCAGGACTCTCTCAGTCGCAGGCGCTGATTGGAGCACAGCCCAATGTGGAGAAACTAGTGGAAGACCACCTGGCTGTGCAGTCCCTCATCAGAGCATATCAGATTCGCGGACACCACGTAGCGCAGCTGGATCCTCTGGGCATTTTGGATGCAGATCTCGATTCGTGCGTCCCTGCTGATATAATCACGTCCTCTGATAAACTCGGCTTCTACGGGCTGGAAGAAACGGATCTGGATAAAGTTTTCCGGCTTCCCACCACCACCTTCATCGGGGGCAGCGAAACTGCGCTTCCTCTCAGGGAAATCATTCACCGCTTAGagATGGCCTACTGTCAGCACATTGGTGTGGAATTCATGTTCATCAATGATCTGGAGCAGTGCCAGTGGATCCGGCAGAAGTTTGAGAAGCCCGGAGTGATGCAGTTTACTCTGGATGAGAAGAGGACACTGCTGGCCCGTATGGTGCGCTCCACCAGGTTTGAGGAGTTCCTGCAGAGGAAGTGGTCATCAGAGAAGCGTTTCGGCCTGGAGGGATGCGAATCTCTCATTCCTGCGCTCAAAACCATCATCGACAAATCCAGTGAGAACGGCGTGGAGAATGTCATCATGGGGATGCCGCACAGAGGCCGTCTGAATGTTCTTGCTAATGTGATCCGTAAGGAGCTGGAGCAGATCTTCTGCCAGTTTGACTCCAAGCTGGAAGCAGCAGACGAGGGCTCCGGTGATGTGAAGTATCATCTGGGCATGTACCACAGACGCATCAACCGCGTCACTGAGCGTCAGATCACACTGTCTCTGGTGGCCAATCCTTCACATCTGGAGGCTGTGGATCCTGTGGTGCAGGGAAAGACCAAGGCGGAGCAGTTCTACTGCGGGGACACAGACGGAAACAGGGTGATGTCCATCCTTCTGCATGGAGACGCAGCCTTCGCCGGTCAGGGAATCGTCTACGAGACTTTCCACCTGAGCGACCTGCCCTCATACACCACACACGGCACCATACATGTGGTCGCAAACAACCAGATCGGCTTCACGACGGACCCCCGTATGGCGCGCTCCTCGCCGTACCCCACCGATGTGGCCCGAGTGGTGAATGCACCCATCTTCCATGTGAACGCAGATGACCCGGAGGCCGTGATGTACGTGTGTAACGTGGCTGCAGAGTGGAGAGCCACCTTTCATAAAGACGTGGTGGTGGATCTGGTGTCCTACAGACGGAACGGCCACAACGAGATGGACGAGCCCATGTTTACTCAACCGCTGATGTACAAACAGATCAAGAAGCAGAAACCTGTTCTGCAGAAATATGCGGAGAAGCTGATCGCAGAAGGAGCTGTGACCAGACAGGAATACGAGGAGGAAATCTCCAAGTATGATAAGATCTGTGAGGAGGCGTACAATCGCTCGAAAGACGAGAAGATCATGCACATCAAACACTGGCTCGACTCACCttggccagGTTTCTTCACTCTGGATGGTCAGCCGAAGACCATGAGCTGTCCGTCCACTGGCCTCAGTGAGGAAACTCTGGCGCACATCGGGCAGACGGCTTCATCCGTTCCTGTGGAGGATTTCACTATAcatggagGTCTGAGCCGTATCTTGAAGAGCCGGTCGCTGATGGTGCAGAACCGCTCTGTGGACTGGGCTCTGGGCGAATATATGGCGTTCGGTTCGCTGCTGAAGGAGGGCATTCATGTGCGGCTCAGCGGGCAGGACGTGGAAAGAGGAACATTCAGTCATCGGCATCACGTACTCCACGATCAGAATGTGGACAAGCGGACCTGCATCCCTATGAACTACATGGACCCTAACCAGGCGCCCTACACAGTGTGCAACAGCTCTCTGTCAGAATATGGAGTTCTCGGTTTTGAGCTTGGCTTTGCTATGGCGAGTCCGAATGCTCTGGTGCTCTGGGAGGCTCAGTTTGGGGATTTCCACAACACTGCGCAGTGCATTATTGACCAGTTCATCTGCCCCGGCCAGGCCAAATGGGTTCGGCAGAACGGCATCGTGCTGCTGCTGCCACACGGCATGGAGGGCATGGGCCCGGAGCACTCATCCGCCCGGCCTGAGAGATTCCTGCAGATGTGCAATGATGATCCTGATGTTTTCCCGAAAATCACGGAGGACTTTGCGGTCCGGCAGCTGTATGACTGTAACTGGATCGTGGTGAACTGCTCCACTCCTGCAAACTACTTCCACGTGCTGCGCAGACAGATCCTGCTGCCCTTCAGAAAACCACTCATCATCTTCACACCGAAATCTCTGCTGCGCCACCCAGAGGCCAAGTCCAGCTTCGAGGAGATGCTGCCTGGCACACACTTCAGCCGGCTGATCCCAGAGCAGGGCAGTGCGTCTCAGAGCGCAGCAGGCGTTCAGCATCTGATCTTCTGCACTGGGAAAGTGTTTTATGATCTGCAGCGAGAGAGGAAGAGTCGAGGCCTGGAGGAGCGCGTGGCCATCAGCCGCATCGAGCAGCTCTCTCCGTTCCCGTTTGACCTGGTGAAAGCGGAGGCTGAGAAGTATCCGCATGCGCATCTGCTCTGGTGTCAGGAGGAGCACAAGAATCAGGGATATTATGATTATGTCAAGCCCCGCATCAGCACCACCCTCAACAACACCCGTCCTGTCTGgTATGTGGGCCGAGATCCAGCTGCTGCTCCAGCTACAGGAAACAAGAAGGCTCATCTGCTGGAGCTGCAGCGCTTTCTAGACACGGCGTTCAACCTGGAGGCTTTCCAGAGCGCGTcataacagcacacacacacacacacctccgtcCCGCAAACACACTCGATATTAGCATCAGAAGGCAAGCTGGCAGCTATTGAGAATAAAGCACTGTAGTCTATGCAGAATCTCCCGCAAGCTTTAACTGCTCCAGGATCAGTGTTCCTGCATGATCTGAGGGAAGGCATGCTGATGGAGGCCTGAAATAATGCTCAGATTCAACCACAGGTTCCCCTTCAGGACGACATCAAGGGTCAGTTCACGCAAATATGAACATGtcctgttcatttactcacccacaagtGATCCAAGAGGAGTTTTATTCCTTCAGTTGGACATTAGAGAAGATTTGGAGCTGAATGTGTGGCGATTAGTGattataatggcagtgaatgctCACAGgttatttagattaaaaataaacacaaataaatgagtTCAAAACAATCGTCACGGCTCCTGATGACACACTAAGCTCTTCTGAAGCTGAACAGTCACTCTGTGTAtagaaattgaacattatttacaatattatgagctataataattattattaactatattattaactatatttgtatatattgaCGCGGCGGCTCAGTGGCTGGCGCTGCTGACTCGCAGCGGGAGGGCCAATCGTTCAAGTTCTAATTGAGCCAGTCGGCACTCTCTgcgcagagtttgcatgttctccccgtgttccctgggtactctggtttcctcccacagtctaaaaacaagtGACATAAGCAAATTGTAATAGTCACAAGCACCTAACGCATACATACTGAATCCATTCTTATAGATCCACTTCTTTAATCAAAGTTGGAAAAAACAAACTGGGGCTCTGGAGAAAAACCCGTGTCCCTCCTAATGATCCAGGCCGGACCCTAGGGCTCatctatctccaagctcagggttctctcctgggacagcatgccaaacctgctactATAGtcgagcattatctaagtgtgaactcttgaaagctgATAATAtcgtaaataatgtttaatttttcaCTCGTTTGCCTTCACAAGGCCTCAGTGTGCATCAGGAGCTGTTGATTTGAACTTGTCTGTGTgtggttatttattatttttctaagtgtttgtattagttttacatttttcaatagtttccaaacaacacaacaaataagCAGAATAATACAGAGAAAATAATGAacgttaaaataaataaaaccaattacttattcattttcttttcagcttagtccctttattaatctggggtcaccacagcggaacgaaccaccaacttatccagcatatacagTATGGTCACCTTAGAaatataaggttttatctgacatttttgtcaaaattgagttattgaattCTTATTAAATTACATCTTATTGACATTATGGGaggttttttataagttgtttacattttactttttatttaaataaacaaatgttctacacacactgtttgctatagaatgcaaaaactgCGAAGCTCAAcatcttaaaatcattcagaacgcagagagaaACTCATAATGCCACACTGCcaaaactgcttttcttacttgattattttttgtcttgtttctgctccaaatatctacaaatttctaaatcaagaagcattttctagaaaagcaaaacatatcgtcttgttttaagaaataatatgccaatatcaTGTGTTTCcttaaataaagctaaataatctgccaatggggtgagcaaaatgatcttgtttttcaatttgtgataagatcattttaatatattaatatattaatataatatttaatatattaatatattaatataaatatatattgatatgttttgcttttaagaatttgtagatatttggagcagaaacaagacaaaaaaaatctaagtaagaaaagcagttttgGCAGTGCAACCATTTAATTCTCactgtacactacggacaatttagcctacccatgtcacctgtaccgcatgtctttggactgtgggggaaacagagcacccagaggaaacccaaacgaacacggggagaacatgcaaactccacacagaaacaccaactgacccagccgagactcaaaccagtgagctTCTAGCTGTggcgattgtgctaaccactgcgccaccgttacacccaattaaattattaatgaaacAATTAAAGCACACAGTGTAAACGCTTTTAATGAAAATACAGGGGCAGTGAACATATTAAGCATGTTCAGAATCCGCAGTGTGTGTTTATCTTTAATCTAGTAAACCggtcaccattcactgccattacaATCACCAAACACCACAGATTCATCTCTGCTTTAATGTTCAGCTGAAGATAAATCTGATCCTATATCTTGGATGATTGTAAGTAAATGAACAGGAAAtgtgcatttttgggtgaactgaccctttaataatTGCATTGAGTATGCACAGAAGTGCTTGGCATGGACGTCTCATGCATGGACTGGATGCGTTTTAAACTACTGTGAAAGGATTATCCATCATCAAGCCTGCGTTTAAGTTTTATAATCTAGAAGAAAGTTTTAAACACCGTGCCAAATTACCATGAACTGCAGTCTGCGACTCCAAGCTGAAACAATCACTGTATCCTGTTTTAATTCAAGACAGACACGCGTACGCTCTCAGCAAAGACTTAaagggtttatttattttcatagatttcTGATTATTCcagacttcaaaataaaagcatctCCGTTTCA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0060047 heart contraction biological_process
GO:0045252 oxoglutarate dehydrogenase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-8 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity. Acts upstream of or within heart contraction. Predicted to be part of oxoglutarate dehydrogenase complex. Predicted to be active in mitochondrion. Orthologous to human OGDH (oxoglutarate dehydrogenase).

Ensembl:

ensembl_id ENSDART00000172621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005951 lncRNA upstream 3030 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005950 lncRNA upstream 230768 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 378646 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 764708 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 1090863 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005952 lncRNA downstream 149810 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004624 mRNA upstream 13586 45089820 ~ 45134581 (+) False XLOC_002464
TCONS_00004625 mRNA upstream 13591 45128375 ~ 45134576 (+) True XLOC_002464
TCONS_00004623 mRNA upstream 42786 45071603 ~ 45105381 (+) False XLOC_002464
TCONS_00004622 mRNA upstream 55942 45071603 ~ 45092225 (+) False XLOC_002464
TCONS_00004621 mRNA upstream 77985 45059702 ~ 45070182 (+) True XLOC_002463
TCONS_00004630 mRNA downstream 42433 45248326 ~ 45322706 (+) False XLOC_002468
TCONS_00004631 mRNA downstream 96532 45302425 ~ 45341821 (+) True XLOC_002468
TCONS_00004632 mRNA downstream 139681 45345574 ~ 45352279 (+) True XLOC_002469
TCONS_00004611 other upstream 240284 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 434350 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 2074911 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 3308134 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 4399269 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004629 other downstream 32063 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000204_00239583_00263369.mRNA True 4063 mRNA 0.49 25 CI01000204 238882 ~ 263422 (-)
bowfin (Amia calva) AMCG00020846 True 3090 mRNA 0.61 22 CM030127.1 34977924 ~ 35005498 (+)