RNA id: TCONS_00004624


Basic Information

Item Value
RNA id TCONS_00004624
length 1281
RNA type mRNA
GC content 0.55
exon number 15
gene id XLOC_002464
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45071603 ~ 45134581 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cGTCACAGGTGGAGAGCTGTTTGAAGACATCGTGGCCAGAGAATATTACAGTGAAGCGGACGCCAGTCATTGCATCCAGCAGATCCTGGAGGCGGTGCTTCACTGCCATCAGATGGGCGTGGTCCACCGAGACCTCAAGCCGGAGAACCTGCTCTTGGCCAGTAAATGCAAGAATGCCGCCGTCAAGTTGGCAGATTTTGGTCTGGCCATCGAAGTACAGGGAGACCAGCAGGCCTGGTTCGGATTTGCTGGAACGCCGGGTTATCTTTCTCCAGAGGTGCTCCGGAAAGAAGCGTATGGGAAGCCGGTGGACATTTGGGCGTGTGgagtCATCCTCTACATCCTGCTGGTGGGCTATCCTCCATTCTGGGATGAAGACCAGCACAAACTCTACCAGCAGATCAAGGCTGGAGCGTATGACTTTCCCTCCCCGGAGTGGGACACGGTCACCCCTGAAGCCAAAAACCTCATCAATCAGATGCTGACCATCAACCCGGTCAAGAGAATCACAGCGCAGGAGGCTCTCAAACACCCGTGGGTCTGCCAACGCTCCACCGTGGCGTCGATGATGCACAGACAGGAGACAGTCGAGTGCCTGAAGAAGTTTAACGCCAGACGGAAACTCAAGGGAGCCATACTGACCACCATGCTGGTGTCGCGCAACTTCTCCGCCAAGAGTCTGCTCAACAAGAAGACTGAAGTCAAGCCTCAGTCTCAGTCAAACAGTGTGAAGAGCAGCAGCGTCTCCAGTCCTAAAGGAAGTGTTCCTCCTCCTGCTCTGgAGCCTCAGACCACTGTTATTCATAATCCAGTGGATGGGATAAAGGAATCTTCCGACAGCAGCAACACAACCATCGAGGATGAAGACGTCAGAGCACGCAAGCAGGAGATCATCAAGATCACGGAGCAGCTGATAGAAGGCCTCAATAATGGAGACTTTGAGGCCTATGCGAAAATGTGTGACCCAGGGCTGACGTCTTTCGAACCCGAGGCTCTGGGGAACCTGGTGGAGGGAATGGACTTCCACAGATTTTACTTTGAGAACTCGCTTTCCAAGAACAGTAAACCGATCCACACCACCATCCTGAACCCTCATGTGCACCTGATTGGTGAAGATGGCGCCTGCATCGCCTACATCCGCCTGACACAGTTTGTGGATGGCCAGGGCCTCCCacgcagcagccaatcagaggagaCGCGGGTGTGGCACCGCCGGGAATCCAGATGGCAGAACATTCACTTCCACTGCTCCGGCGCTCCAGCGGCTCCTCTGCAGTGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000175481

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005950 lncRNA upstream 172421 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 320299 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 706361 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 1032516 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 1065169 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005951 lncRNA downstream 6363 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 221122 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004621 mRNA upstream 19638 45059702 ~ 45070182 (+) True XLOC_002463
TCONS_00004620 mRNA upstream 42578 45031398 ~ 45047242 (+) True XLOC_002462
TCONS_00004618 mRNA upstream 91368 44984946 ~ 44998452 (+) False XLOC_002461
TCONS_00004619 mRNA upstream 95232 44986419 ~ 44994588 (+) True XLOC_002461
TCONS_00004617 mRNA upstream 126045 44956660 ~ 44963775 (+) True XLOC_002460
TCONS_00004626 mRNA downstream 13424 45148005 ~ 45203196 (+) False XLOC_002466
TCONS_00004627 mRNA downstream 13586 45148167 ~ 45205893 (+) False XLOC_002466
TCONS_00004630 mRNA downstream 113745 45248326 ~ 45322706 (+) False XLOC_002468
TCONS_00004631 mRNA downstream 167844 45302425 ~ 45341821 (+) True XLOC_002468
TCONS_00004632 mRNA downstream 210993 45345574 ~ 45352279 (+) True XLOC_002469
TCONS_00004611 other upstream 181937 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 376003 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 2016564 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 3249787 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 4340922 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004628 other downstream 41839 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 103375 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU445181 True 83 TUCP 0.43 1 CI01000204 388580 ~ 388662 (-)
bowfin (Amia calva) AMCG00020843 True 561 mRNA 0.57 5 CM030127.1 34935015 ~ 34936792 (+)