XLOC_002468 (zmiz2)


Basic Information

Item Value
gene id XLOC_002468
gene name zmiz2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45248326 ~ 45341821 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004630
CGGTGGAGCTGAGCAGCAGAACAACCGCGACTTTCAGGATTTACACAAAAACACCGCATTAAAACACGCTCATGCTGGACGATCGAGAGCCAAGGCCGATTATACCGATACATCCGGATACATTGGCGGATGATATGATCCAATTTGAGCGGTTTTAACGTCTTCGCGCGGTTTCCGATTTCTGAGGTAACCGAGAAAAGAAGCGCACGGCACGTTTTTATCTACGGTAACCCCGCGAGGATTGAAGCAGATCTCGATCGCTCATTTCTGATCCATATTTCGAGGGGATTTTCCTGCCGAGGAAGGCCGAAAGCGGACTCCCATCCAGCCGGACACATCAACCTCGGGCAGCCGGAGTGGAAGACTGCCTGCTAGGTTGAGGAGATTCGGGGTGTCCCATAGACCCCTAGATTCCTCCGATGAACCCCATCAACTCCATGAAACCTGCCCTGCCTCCAACGCCGCACAGTGACTCCTCATACCCATATGATCCTGTCCCCTGGCAGCAAGGCCCCAGTCAGCCCGCCGGCTCCCTCTCTGTGGTAACCACAGTGTGGGGGGTAACCAACCCTTCAGCCAGCCAGgttTTCGGAGCACCCATGGGTCCAGGAGGAAACTCAGCCGGGGGTCACATGATGCCGGGCAGCAGTCCGGGCATGAACTCGCCCCAGTTCATGAGCCAGCAGGGCTACCCGGAGCCCAACAAAACATACATGCAGCAGGGCATGTACGGCCGGCCCAGCGGAGGATACCCTGCCGGACCCGGATACGGCGGCagTTACCCCAATAACGGCGCCGGTTCTCTCGGGATGCCTCCTCATGGTGTTCGTCCACCCACTGACTTCACCCAAGCAGCCGCGGCAGCAGCGGTCGCCGCAGCAGCAGCCACCGCCACCGCAACCGCCACCGCAACTGTCGCCGCCTTACAGGAGAAGCAGAACCAGGAGCTGAGCTACGGCCCTATGGGCGGAGCGTCCTCCTACAACACCCAGTTCCTGTCTCACTCCGGCCCTCGTGGGCCCCCAGGGATGTCCCCCTCTGGGATGGTGGGCTCCAGACCCCCCTCTATGGGCCCCATGTACACACAGCAGGGCCAGAGGCTCCCGCAGCACCCCGGATACCCAGGGAGTCAGCAGGGGCCGCCGCGCCACCAGCAGGCCCTCAAACGCCCGTACAACTCTGAGGGTTTTCCGGGTCAGCAGTACGGCCCCGGGATGGGCGGTGGGGGACCGTACCCTGGGCAGCCCATGCAGTATCACGGCCCCGGGCCCCAGCGCTCTGCCCCGTCCCCATCATACCCCACACACCGCATGCCGCTCCAGCAGCCCAGTATGGCCCAGTATCCTGCAGGACCAGGAAACCCCAGCCAATACTACAAGGCGGAGCAGTTTAACGGTCAGGGGAACAACCACAGCCTGAGCTCTGCAGTGACCACTGGAGGATACAGCAGCTTCAACCAGCCCACCGTCAAc
>TCONS_00004631
ACTGCCTGCTAGGTTGAGGAGATTCGGGGTGTCCCATAGACCCCTAGATTCCTCCGATGAACCCCATCAACTCCATGAAACCTGCCCTGCCTCCAACGCCGCACAGTGACTCCTCATACCCATATGATCCTGTCCCCTGGCAGCAAGGCCCCAGTCAGCCCGCCGGCTCCCTCTCTGTGGTAACCACAGTGTGGGGGGTAACCAACCCTTCAGCCAGCCAGgttTTCGGAGCACCCATGGGTCCAGGAGGAAACTCAGCCGGGGGTCACATGATGCCGGGCAGCAGTCCGGGCATGAACTCGCCCCAGTTCATGAGCCAGCAGGGCTACCCGGAGCCCAACAAAACATACATGCAGCAGGGCATGTACGGCCGGCCCAGCGGAGGATACCCTGCCGGACCCGGATACGGCGGCagTTACCCCAATAACGGCGCCGGTTCTCTCGGGATGCCTCCTCATGGTGTTCGTCCACCCACTGACTTCACCCAAGCAGCCGCGGCAGCAGCGGTCGCCGCAGCAGCAGCCACCGCCACCGCAACCGCCACCGCAACTGTCGCCGCCTTACAGGAGAAGCAGAACCAGGAGCTGAGCTACGGCCCTATGGGCGGAGCGTCCTCCTACAACACCCAGTTCCTGTCTCACTCCGGCCCTCGTGGGCCCCCAGGGATGTCCCCCTCTGGGATGGTGGGCTCCAGACCCCCCTCTATGGGCCCCATGTACACACAGCAGGGCCAGAGGCTCCCGCAGCACCCCGGATACCCAGGGAGTCAGCAGGGGCCGCCGCGCCACCAGCAGGCCCTCAAACGCCCGTACAACTCTGAGGGTTTTCCGGGTCAGCAGTACGGCCCCGGGATGGGCGGTGGGGGACCGTACCCTGGGCAGCCCATGCAGTATCACGGCCCCGGGCCCCAGCGCTCTGCCCCGTCCCCATCATACCCCACACACCGCATGCCGCTCCAGCAGCCCAGTATGGCCCAGTATCCTGCAGGACCAGGAAACCCCAGCCAATACTACAAGCAGGCGGAGCAGTTTAACGGTCAGGGGAACAACCACAGCCTGAGCTCTGCAGTGACCACTGGAGGATACAGCAGCTTCAACCAGCCCACCGTCAAcgggccggGCCGAGCAATGCCAGGATACCCCAGTTCTCCTCTGCCTGGGAACCCCACCCCCCCCATGACCCCCGGCAGCTCCATGCCCTACATGTCCCCCAATCAGGACGTCAAATCCCCATTTCTGCACGACGTCAAGCCCAACATCAGCGCTCTGCAGCCCCCTACAGGAAACCCCAGCGATGACCTGCGTCTGACGTTCCCGGTGCGAGACGGTGTGGTTCTGGAGCCCTTCAGACTGGAGCACAACCTGGCCGTCAGTAACCATGTGTTCCAGCTGCGCGACTCCGTCTACAAAACACTCATGATGAGGCCTGATCTGGAGCTGCAGTTCAAGTGTTACCATCATGAAGACCGGCAGATGAACACTAACTGGCCGGCGTCGGTGCAGGTTAGCGTCAATGCTACGCCTCTGACCATCGAGCGCGGTGACAACAAGACGTCCCACAAACCCCTGTACCTGAAACACGTGTGCCAGCCAGGACGCAACACCATCCAGATCACCGTCACCGCCTGCTGCTGCTCTCATCTGTTCGTGCTGCAGCTGGTGCATCGGCCGTCTGTGCGCTCAGTGCTGCAGGGACTCATGAAGAAGAGGCTGCTGCCGGCCGAACACTGCGTCACCAAGATAAAGAGGAACTTCAGCAGCGGGACCATCCCGGGAACCCCAGGCCTGAACGGAGAGGATGGTGTGGAGCAAACGGCCATCAAGGTGTCGCTCAAGTGTCCCATAACGTTCAGGAGGATCCAGCTTCCAGCCCGCGGACACGACTGCAGACACATACAGTGTTTTGACCTGGAGTCGTACCTGCAGCTCAACTGTGAGAGAGGAACCTGGCGCTGTCCTGTGTGCAATAAAACCGCTCTGCTGGAGGGGCTGGAGGTGGACCAGTACATGTTGGGCATCTTGATCTACATTCAGAATTCAGACTATGAGGAGATCACCATTGACCCGGTGTGCAGCTGGAAGCCTGTCCCGGTTAAACCAGACCTGCACATTAAGGAGGATCCGGACGGGCCGGCCCTGAAGCGCTGTCGAACCCTGAGCCCCAGTCACATGATCCTGCCCAGCGTGATGGAGATGATCGCAGCGCTGGGTCCCGCATCCTCGCCCTACCAGAGTCTGCCAGCAGGGGGCAGCAGCAGCACGCCCGACTATCCCAgccaagGTGGTTCGGGATACTCCAGCCAGCCAGGCTTTTCAGATTTCCCCAACGCCCCCGGCACCCCGACCCTGGGGGAGTTCACCCCTGGCCCCCCACCCCTGTCTTACCAGTCTGACCTGCCCAGCGGACTGCTGACCCCCGAGAAACCTGTGGGACACCCAATGCCCGGACAGATGCCTCACTCTAGTCGCATGGATCCTTCCCACAATCCCCtgcagcagcaacagcagcagcatcAGGCTCTCCACGGGAGCTCCAGCATGGGTCCCGGGGCCCCGATGCACTCCCGTGGGCCCTCCCAGAATCCCCGCATGCACACAGATAGCTTCGGACTCGGGGCCCCTGGGGGACCAGGCGATGTTTCAGAGCCAGCCCTCGATCTTCTCCCAGAGCTGACGAACCCAGATGAGCTGCTGTCCTACTTGGGTCCTCCAGATCTTCCCAATAACAGTAACGATGATCTGCTGGCTCTGTTCGAGAGCAACTGAACCGTCCGGCGCTCCTCCACCGTCCAGCAGTCCTCCATCCAAGCCAAACACACATCCCATTGCGTCTGTGCACGGTTTCCTCCTGAGACTGGACCGCAGTGACTCTTGGGAAGGTGCAAGGAAGATGGCTTTTATTTTTCCTCCTGTGACGATGTTACTGTCCGACTGCTTCTCTGAACTCTGAACTTCAGTCGCTCCAATCATTTGTAGAAAGACGCACATCTCGCTTTACACTCGTGTGGTGTAGTAAaggacattgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgttgaggatCAGGTCATTGCTTGTTTTTCTTTTCACTGCGGCTCCTGTTTTAAATCTAAATTAGATGAGGAATTGTGATCTCGTAATGCTGGATTCACACCAAACACGTAATTAAGTAATCgatataaaagtaaattaaatataatggtAATGCAAACGATTGAACTATATCGAATTATGATGGCAGATAAAGCTGTGAGTGGTGTTGTAACCACAGCTGCAGAGTATTGGATTACATGTAACCTGGattacatctgtttttttttatcgtACACCAGCACTACTTTGAAAAGATTGAAGTACATAAGAACATATTGTAGAATAACGAACGAAAACTTCACATTGAGACAATACAAAACTATGTAGTTCtaaatttaaatcattaaataggATTTTTCATGTCATTATTGGATCGATAACTAAAAGCGAAGTACTCTAATGCTGTATTCAGAACAAACACGAAATTAAGTAttgaatataaaattaaattacatataaTGTTAATGCAAACATTGACGAATAATCACAGCACAGTGCGAATGTCGCAGATAAAGCTGTGAGCATTATTATAACCACAGCTGGGGAATATCGAGTGACATGTAACCTGGATTACATTAGTTTGTTTATTCGTACAGCAGCAATTTACGACTACTTCAtgacattattgaaataaataagaacatattgtataataatgaacGAAATCTTCACATTGAGACAAAACAATatagttttacattaaaaacactaAATATGAATTTTCATGTCGATATTGAATTAATAACTTACAGCGAAGTACTCTAATGCTGGATTCAGAACAAACTCCGAACTAAGTATTCAATATAAAAGTAAATCACATATAAAGTTAATGCAATCGCTTAAACAGTGGCGAATTATCACCGCAAGGTGCGAATGTTGCAGATAAACCTGTGAGCTCTACTGTAACCACAGCTGTGGAGTATCGGATTGCATGTATACTGGATTACATCTGTTTGTTTAACATACTACGTTGACTACTTTGACAAGATTGAATTCGATATGAACATATTGTATAATAACGAATGAAAACTTTacattgaaacaataaaaaaacaacatagttttacattaaaaacatgattttttatttttcatgtcgATTTAGCATCGATGACTTCCATCAAAGTACTCGGAATTAATGCGGAGTTAAAGTTAATGCAAAAAGTTGAATAGTGGCGAATTATCACCGCACAGTGCGAATGTCGCAGATAAATTTGTGAGCGTTACTGTAATCACAACTGCGGAGTATCGGATTACATGTTACCTGgattacatttgtttgtttttcgtACACCAGCAATTTACAACTATTTCATGACTACAATGAAGTAGATAAAaagtttttgtataataataataacaaacgaCAACTTCACATTAATAAGAGACAAcgcaaatgtttttaaatttgtcaTTAACAACATTAAATCTGATTTTTCATGTCAAT

Function

symbol description
zmiz2 Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within dorsal/ventral pattern formation and mesoderm development. Orthologous to human ZMIZ2 (zinc finger MIZ-type containing 2).

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048096 chromatin-mediated maintenance of transcription biological_process
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-285 Predicted to enable nuclear receptor coactivator activity. Acts upstream of or within dorsal/ventral pattern formation and mesoderm development. Orthologous to human ZMIZ2 (zinc finger MIZ-type containing 2).

Ensembl:

ensembl_id ENSDARG00000098683

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004630 False 1472 mRNA 0.61 8 45248326 45322706
TCONS_00004631 True 4555 mRNA 0.51 18 45302425 45341821

Neighbor

gene id symbol gene type direction distance location
XLOC_002467 CT956056.1 coding upstream 10284 45237956 ~ 45238042 (+)
XLOC_002466 ogdhb coding upstream 42433 45148005 ~ 45205893 (+)
XLOC_002465 NA coding upstream 103189 45140944 ~ 45145137 (+)
XLOC_002464 camk2b2 coding upstream 113745 45071603 ~ 45134581 (+)
XLOC_002463 nudcd3 coding upstream 178144 45059702 ~ 45070182 (+)
XLOC_002469 ppiab coding downstream 3753 45345574 ~ 45352279 (+)
XLOC_002470 NA coding downstream 13882 45355703 ~ 45356324 (+)
XLOC_002457 NA non-coding upstream 330927 44913607 ~ 44917399 (+)
XLOC_002456 BX569788.2 non-coding upstream 340443 44907768 ~ 44907883 (+)
XLOC_002453 BX569788.1 non-coding upstream 478805 44767388 ~ 44769521 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000204_00155459_00172374 ZMIZ2 coding CI01000204 null 155459 ~ 172374 (-)
bowfin (Amia calva) G133393 NA unknown CM030138.1 CM030138.1 6530697 ~ 6548895 (-)
tiger barb (Puntius tetrazona) G113300 NA non-coding NC_056714.1 CM032083.1 16190862 ~ 16192689 (-)