RNA id: TCONS_00004619


Basic Information

Item Value
RNA id TCONS_00004619
length 387
RNA type mRNA
GC content 0.55
exon number 4
gene id XLOC_002461
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44984946 ~ 44998452 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCAGGAGGCAAAGCAGGAAAAGACAGTGGAAAAGCCAAGACGAAAGCCGTCTCCAGATCTCAGAGAGCTGGTCTGCAGttccCTGTAGGCCGTATTCACAGGCACCTGAAGACCCGAACCACCAGCCATGGCCGTGTCGGAGCTACAGCTGCGGTTTACAGTGCTGCTATCCTGGAGTATCTCACCGCTGAGGTGCTGGAGTTGGCTGGAAACGCTTCTAAGGATCTGAAGGTGAAGCGAATCACTCCCAGACATTTACAGCTGGCCATCCGCGGAGACGAGGAGCTGGACTCGCTTATCAAGGCCACCATTGCTGGAGGAGGAGTCATTCCTCACATCCACAAGTCTCTGATTGGGAAGAAGGGTCAGCAGAAGACCGTATGA

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-24 Predicted to enable DNA binding activity. Acts upstream of or within DNA methylation involved in embryo development. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2AZ1 (H2A.Z variant histone 1).

Ensembl:

ensembl_id ENSDART00000162566

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005950 lncRNA upstream 69020 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 216898 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 602960 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 929115 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 961768 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005951 lncRNA downstream 146356 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 361115 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004616 mRNA upstream 21643 44955106 ~ 44964776 (+) False XLOC_002460
TCONS_00004617 mRNA upstream 22644 44956660 ~ 44963775 (+) True XLOC_002460
TCONS_00004615 mRNA upstream 44188 44940693 ~ 44942231 (+) True XLOC_002459
TCONS_00004613 mRNA upstream 46761 44924684 ~ 44939658 (+) False XLOC_002458
TCONS_00004620 mRNA downstream 36810 45031398 ~ 45047242 (+) True XLOC_002462
TCONS_00004621 mRNA downstream 65114 45059702 ~ 45070182 (+) True XLOC_002463
TCONS_00004622 mRNA downstream 77015 45071603 ~ 45092225 (+) False XLOC_002464
TCONS_00004623 mRNA downstream 77015 45071603 ~ 45105381 (+) False XLOC_002464
TCONS_00004624 mRNA downstream 95232 45089820 ~ 45134581 (+) False XLOC_002464
TCONS_00004611 other upstream 78536 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 272602 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 1913163 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 3146386 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 4237521 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004628 other downstream 181832 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 243368 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000204_00387148_00389789.mRNA False 924 mRNA 0.47 5 CI01000204 386656 ~ 389789 (-)