RNA id: TCONS_00004632


Basic Information

Item Value
RNA id TCONS_00004632
length 858
RNA type mRNA
GC content 0.55
exon number 5
gene id XLOC_002469
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 45345574 ~ 45352279 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCACAGCCGCACGTCGCTAATTTATTCAAGCGCGCCGCTTCTGATTGGCCCGTTCGCACGTCACTCAGCGGATCCTCCGCGGCAGAGGCGTCTTTATATCCCGCGCGCGCGCACAGTTCCTGCTTCCCGATGAGCTGCGGCGTTTGCTGGGATTCATTCAGCTGCACAAACTGACCGAGTTTATTCCTTCATCATGGCAAACCCCAAAGTGTTTTTTGACATCACCATCGATGGGAAGGAGGCGGGGAGGATCGTGATGGAGCTGAGAGCTGATGTTGTGCCGAAGACCGCTGagaacTTCCGTGCACTCTGCACCGGAGAGAAGGGTTTCGGCTACAAGGGCTCCGGCTTCCACCGCGTCATCCCCCAATTCATGTGTCAGGGCGGTGATTTCACCAATCACAACGGAACCGGAGGAAAGTCCATCTACGGCAACAAGTTTGAGGATGAAAACTTCACACTGAAACACGGAGGCAAAGGCACCCTGTCTATGGCCAACGCCGGCCCCAACACCAACGGCTCGCAGTTCTTCATCTGCACCGCCGACACCAActgGCTGGACGGTAAGCACGTGGTGTTCGGGAAGGTTGTGGATGGTTTAGATGTTGTGGATGCCATCGAGAAAAAAGGAAGTAGCAGCGGGAAATGCTCCGCCAAGGTCGTGATCGCCAACTGCGGCCAGCTCTAACTCTCctcccctctccctctctctgtctccCTCGTTCCCTCACTCTCTCTGGTTTTTGTATGGTCATTCCTCAATGAGACGCTCCTGTTTCATGTATTCTGACGGTTTCCAGGACGCAACGTCTTCTGAAACGTGGATTAAAGATGAATCCAGATTCCTTTGACTGGC

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0001666 response to hypoxia biological_process
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016018 cyclosporin A binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7459 Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Acts upstream of or within response to hypoxia. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Is expressed in brain. Orthologous to human PPIA (peptidylprolyl isomerase A).

Ensembl:

ensembl_id ENSDART00000166085

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005951 lncRNA upstream 200437 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005950 lncRNA upstream 428175 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00004606 lncRNA upstream 576053 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005949 lncRNA upstream 962115 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 1288270 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00005952 lncRNA downstream 3424 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004631 mRNA upstream 3753 45302425 ~ 45341821 (+) True XLOC_002468
TCONS_00004630 mRNA upstream 22868 45248326 ~ 45322706 (+) False XLOC_002468
TCONS_00004627 mRNA upstream 139681 45148167 ~ 45205893 (+) False XLOC_002466
TCONS_00004626 mRNA upstream 142378 45148005 ~ 45203196 (+) False XLOC_002466
TCONS_00004624 mRNA upstream 210993 45089820 ~ 45134581 (+) False XLOC_002464
TCONS_00004629 other upstream 107532 45237956 ~ 45238042 (+) True XLOC_002467
TCONS_00004628 other upstream 168650 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004611 other upstream 437691 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004603 other upstream 631757 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004569 other upstream 2272318 43037133 ~ 43073256 (+) False XLOC_002435

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000204_00150174_00152745.mRNA True 1116 mRNA 0.41 5 CI01000204 149618 ~ 152810 (-)