RNA id: TCONS_00004580


Basic Information

Item Value
RNA id TCONS_00004580
length 717
lncRNA type retained_intron
GC content 0.52
exon number 7
gene id XLOC_002438
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43406796 ~ 43450588 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtgtttgtgtgtgctatCAGCTGGTGGTGCTGAGGGATCTGCATGTGGTCAGTGCTCTGGCTCATGTGTGTGGACAGAAGCGCACTCTTCTGGCCAGCGTTCTGCTCCGCATCTTCAGACACCAGAACCAGGAGGCGCAGCTGCTCCGAGAACTCAACGACCGCGAGATCTGTGCTGAAGATGAAGCCACGACTCTGTTTCGCGCCACGACGCTGGCCAGCACTCTGATGGAGCAGTACATGAAGGCCACGGCCACACCGTTCGTCCACCACGCGCTCAAAGACTCCATCCTGAAGATCATGGACTCCAGGCAGTCCTGTGAGCTGAATCCCTCAAAGCTGGAGAAGAACGAGGATGTGAATGTGAATCTGGCTCATCTGCTGAGCATCGTGTCGGAGCTGCTGGAGAAAATATTCATGGCTGCGGAAATCCTCCCTCCGACTCTCAGGTTCATTTACGGGTGTTTACAAAAAGCTGTGGAGCAAAAATGGCCCAGAAACACCACCATGAGGACTAGAGTTGTAAGTGGATTTGTCTTTCTCAGATTGATCTGTCCTGCAATTGTCAACCCAAGAATATTTAACATCATTGCTGatccTCCGTCTCCTGTCGCTTCACGGACTCTCACTTTAGTGGCCAAAGCGGTGCAGAATCTGGCCAACCTGGTGGAGTTTGGTGCCAAAGAGCCGTACATGGAGGGAGTGAATCCATTCAT

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-50 Predicted to enable GTPase activator activity. Predicted to act upstream of or within negative regulation of Ras protein signal transduction; positive regulation of GTPase activity; and signal transduction. Is expressed in head. Human ortholog(s) of this gene implicated in arteriovenous malformation and basal cell carcinoma. Orthologous to human RASA1 (RAS p21 protein activator 1).

Ensembl:

ensembl_id ENSDART00000141685

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005943 lncRNA upstream 613323 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 688649 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005942 lncRNA upstream 702235 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005941 lncRNA upstream 711008 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005939 lncRNA upstream 956970 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005944 lncRNA downstream 76538 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA downstream 81514 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00005946 lncRNA downstream 386271 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005947 lncRNA downstream 386271 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00004582 lncRNA downstream 551296 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00004575 mRNA upstream 170344 43189325 ~ 43263885 (+) True XLOC_002437
TCONS_00004574 mRNA upstream 171269 43188678 ~ 43262960 (+) False XLOC_002437
TCONS_00004571 mRNA upstream 249875 43088270 ~ 43184354 (+) False XLOC_002436
TCONS_00004573 mRNA upstream 249875 43117777 ~ 43184354 (+) True XLOC_002436
TCONS_00004572 mRNA upstream 250259 43117661 ~ 43183970 (+) False XLOC_002436
TCONS_00004581 mRNA downstream 355074 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004583 mRNA downstream 552415 43994471 ~ 43996117 (+) False XLOC_002443
TCONS_00004584 mRNA downstream 552514 43994570 ~ 43995230 (+) True XLOC_002443
TCONS_00004586 mRNA downstream 599977 44042033 ~ 44051808 (+) False XLOC_002444
TCONS_00004585 mRNA downstream 599977 44042033 ~ 44051808 (+) True XLOC_002444
TCONS_00004569 other upstream 360973 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 1594196 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 2685331 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 2794425 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 2824276 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 1257761 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1465712 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1734364 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1795900 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//