RNA id: TCONS_00004574


Basic Information

Item Value
RNA id TCONS_00004574
length 5586
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_002437
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43188678 ~ 43263885 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAACTAAAAGATCAGGAACTGGAAAAATaaGTTTGAGATGATGTTGTTGGACGTGAAGCACATCCTCTGGCTGATCTGTGTCTGCAGCGCCTACTCGCAGGATGACTCTGTTCGCCGGATGCGGGTGGTTCGGAGCTCTTCCCGGGTCCACGGCGCTCTAGCGCAGTCTGTTGTTTTACCGTGTCGTTTTCTGGTGCTGCCGCCGCTACCGGGCTCCTCCGTCATAACTCACTCTGATCACCTGCGCATCAAGTGGACCAAACTCCAGAGCCATGGGGAAGCCGTCGCTGTGGTGGCCCAGAACGGCATCATCAAAATGGGCCAAGAGTATATGGGCCGGGTGTCAGTGCCCAGCCGACCGGAAGACCAAGGGGACGCTTCTCTGACCATCTCCAGACTCAGGGCCAGTGACGCCGGGGTGTATCGCTGCGAGGTCATGCACGGCATTGAGGACACTCAGGACTCCATTACTCTGGATGTCAGTGGTGTTGTGTTTCATTACCGGGCGAACACCAGCCGCTACAGTCTGAACTTCACACAAGCTCAGCAGGCGTGTGCAGATGTGGACTCCAGCATCGCCACCCCTGAACAGCTTTATTCAGCATACGAGGACGGATTCGAGCAGTGTGACGCCGGATGGATGGCCGACCAAACCGTCAGATATCCCATCATTAGGCCACGTGACGGTTGTCATGGTGATAAGTGGATGAAGCCGGGGGTCAAATCATACGATGTCAGGAACGCCTATGAGAAGTATGACGTTTACTGCTATGTGGGAAAACTACAAGgtgagGTGTTCTTCATTGATCAGAAACTGTCTCTGGACGAGGCCCGCTCGGCGTGTGTGGGTCAGGACTCAGTGTTGGCGTCTCCTGGTCATCTTCATGCCGCCTGGAGAGACGGCATGGACCAATGCGATTTCGGCTGGTTGTCGGATGGCAGCGCTCGATACCCGGTCTCCGTTCCCAGACTGCAGTGCGGCCGAGGACAACTGGGCGTCAGGACCATGTACCGCAACGCCGACCGGACGGGCTACCCTTTACCCACAATGAAACTAGGAGCCTACTGTTTCAGAGGACGGGATCCTACAACTGCACCCACAGCTGGACCCACAACACCTACAGTTCCCTGGGACGCCCTTAAGATTTCCTCCCTGGAAGTAATGTCTTCTGCGCCAACCGATGACACCATAGAAGAACCACCTTCAATGTTCTCTGCAAGCATGGCACCACGTGACAAACCCACTCCTGAAGCATATCCCACAATTGTTACAACTCAAACTGGAGGGATTTTGGATACACCTTCCCCAACATTTGGTGACTATGATGATAATAGCAACTTAATGGTGCAAGGGGCACCTGACCTTTCACTCCAGGGTACCGTGGGCTCCACCACAATGGTAACCCCATCTTATTACGACTCTATTTTCTCTATCAAACTTCCTCCTCAACCCACAAAAGGGGTCAAGAATCCTTTGGATACACCTCATGGGGAATACAGTAGTGCTGAGGGAAGCATCAGCGGAGACACGGAGACTCCGGAGAGTGTGATTCCTACTTCACCTGTGCTTGTCACAACTCTCCAAGTAGACCCAGACCAACCAAAAGTGGTGTACAAAGAGGACGGAAGCACAGAAAACATCACTGAAGGAGTGGTCTTTGCTGAGTCCAGTATGGGAACCCCAGGCTTAGGTGAAGTGATTGTGCATGGGTCACAGTCTGAAGTCTCCAAGAATGTCAGCTTTCCGATAGACATCAGCTTGCTCATAGTCGACATCAAGGATACAAATCAATCAGTTGAAAGTGTTCTGGATTTTCTTGGAGAACCACGGGGCATCACCGATGTTCTAACATCTAGTGAAAATGAGCCACCTTTGGGCAGTGGAGACCTTGAAATATATCCTTCAGCTTCTGTTACCGTCACCCCAGAAGTGAGTTTCATTAACGGGAAGCACGAGTTGACTCTGCAACCAGTCGCCGAACAGGAGGCTAGAGGAGACCAGTTCGACACTGTGACCCCTCCAATTGAAGAAATCATCCCTGACGATGAGATAGTAATTCTTATGTCAGAATTTGAAGGTGTTGTATCTTCCCCTAAAACAGATGAATCTGGCTTGACTACGAGAAGTCCAGTTGAGCCCCATTTCACAACAAAAATCTCAAAGCCAGACTTGGGCAGTGGAGATCTTGAAATATATTCTTCAGCTTCTGTTACCGTCACCCCAGAAGTGAGTTTCATTAATGGAAAGCATGAGTTGACCCTGAAACCAGACGTTGAACATGAGGCTAGAGGAGATCAGTTTGACACTGCGACCCCTCCAATGGAAGAAATTATTCCTGATGATGAGGTTGTAATAGTTCTGGCCGAAGCTGAAGGTCTTACATCTTCCTACAAAACGGATGAATCTGGCTTGACTACAAGAAGCCCAGTTGAGCCCTATTTCACAACAAAGATCTCAGAAAGTGCAACCATGAGTGAATTGCCCATATTTTCAACCAAATCTCCAAGCCAGGAGATAACCCCACAAGCCATATCATTTAGCACATCAATCAATGAAGAAAGTTCAGGGATGCGCCCAACAGATGATGAAGAGGAGCTGACTACATTGGAAGGCTCTGCGGATGACCTGCAGTCAGCTACAGCTTCTACTGACCCAGATATGGTGGCTACTGACGAGACTGAAATAGGTGGAACAGAGAAGCCTACACAGGCATATGGGGTGCATTGCTCCACCCAAGGACCAATTACAACTCCAGAAACATCTCAAACTACAGCATCCAGCCCTGTAGAAAAAGAAATAAAGCCGGAAAGAGATGATTTTGAGGGTTCCACCTCAGCAGAAGAAGAGAGCTCTGGACAAGATATGTATTCTCGAGAGGAACCAAAACAACCGATTTTATCTCCAACTCTCTCTGTTCCTTCTCACTCCTTTACAACTTCCTCAACAAGTACTCATCCCAAAGACCCAAGGGAACCTGCTAGTTTACTCTTGCCTAGTGCAGAGCCTGCAGTAAATGTGGTTTCAACTTTACAAACAAGAGTAATCCCAGAGGAGAAAGACCAAAGCAGGAGTACCACTAAGAGTCCTTTATTGGTGCCTGAGTTTGAAAAAGATGTAAGCACAGTCTTCGCCATCTCTGGGGACAGTGGCTCTGGTGATCATCCAACAGAAGCATTAACAAAACAACCTTTCATTGTGACTACCGTTCCTTCTCTTTTCATTCAACAAACTGTTGAAACTAGTGTTGATGCAAATGAACCAACTAAAGCATTTGAAGGTTCTGCTGAAGACACAACGCCATTGTCTTTCACCACTGCCCGAACTGAAACTAAATTCACAACACAAAGATCAGATGCTAGAATTCTGCCCACGGATAGTCTAAGAGCAATAATGTCTTCCTCCCAAGAAACTGTTCTAATCCAAAAAACTCATTCGGAAGAGACAACCACTTTAGTGGTGCCATCAGAGACTACAGAAGAGACGATGTTACCTTCTAAATTTGGATTCTCAACAGAGGAGCCTCTCATCTCAACGTCTGTACATTCCAGTGGCCCCATCACTATTGCTGATACAAATTTAAGCATTTCAGAGTCAGTCCAGGATATTACAAGTACTTCTTCTACAACAGAAGACATGATCACCACCCCTAAAGCCACAAGTACTTCGTCATTTGAAGAGACTGTTGTAGATTATGAAGATATGCAGGGTGCCTCAGTTGTTGAAAGACAACCACCAATCAGGGAAGAGTTCACCACAAAAAAGCCAGAGGTCTGGACTGATTCCAGCTACACTGTGGAGAGCCATGTGGTGGATTTGCAAGATCACGCACTTTGCTCGGTCAGTGTGTGTGAAAACGGCGGAACATgcttctccagcagaaaaggaaaTGTTTGTGTCTGCATGCCTGGATTTAGTGGGGAACGCTGTGAAAACGATGTCGATGAATGCCAGTCGAATCCTTGCCGCAATGGTGCTACATGCATTGATGGAATGAACTCTTTCAAATGTGTCTGTCTGCCCAGCTATTCAGGATCCCTCTGTGAACAAGATACGGAGGTGTGCGACTTTGGTTGGCAGAAGTTTCAGAGCCACTGCTATAAGTACTTCACCCACCGGCGGACATGGGAGGCAGCAGAAAGAGAGTGTCGTCTGCAGGGCGGACACCTGACCAGCGTCCTGTCCCACGAGGAGCAGCTCTTCGTAAATCGTTTGGGTCATGACTATCAGTGGATCGGCCTGAATGATAAAATGTTTGACAATGATTTCCGCTGGACTGATGGACATCCTATGCAATTCGAGAACTGGCGTGATGGTCAGCCGGACAGCTTCTTCTCCACCGGTGAGGACTGTGTGGTCATGATCTGGCATGAGAGCGGACAGTGGAACGATGTGCCCTGCAACTACCACCTGACCTTCACCTGTAAGAAGGGCACAGTGTCCTGCGGTCAGCCTCCTCTCATAAAGGACGCTCAAGTCTATGGCAGCATGAAGCCGCGATACGAGATCAACTCTCTGGTTCGATATCACTGTAAAGAAGGCTTCATCCAGAGACATGTCCCTACTATCAGATGCAGAGAAGACGGACAGTGGGACAAGCCCAAAATCACATGCTTGAATCCGTCCACCTTCCAGAAGATGTATGCACACAAATACCAAAACAACAACTATTACAACAGCAGTAAGAGACGCTTCAGTGAATCTCAGTACCGCCATCGCTGGTCAAAAACAGCAGAAGAACTCAAACACTGATCTGCATCCAGATCTACTTCACGTCTATCTTTCAAGACAAAACATGTGCCTGATGAATGTTTTATAGAGCCGCAAAGTGAATTTCCCTGAGGgactgcaagaaaaaaaataatcataacaataaaaaaccACCACACAGAGCCACTGAGAGTGTACTTTGACTATGCAAATGAATACATTGCATTTAATAATACTGTCTTAATGTTTGGATGTTGGAATAGGGGGCGGGGCTTAAATGTATATAGTAGAAATGAGGATCAAGTCAACGCAGCTGTGAATTGGTGACTGTATTCATCCGTAAGTTTTGCTTGCGAAGAACTGGATTTCCTTTTCTCTCCGGCTCTTTAAGAGAGCACTATGGTACGAGCAGTTTACTGATAAAAGGACAATAggctttatatgtttgttttgaaTTGTGGCGAAGGGGTTTGAATGGGAGGTCACGAGTCCAGAGGACAAACAATGCTCAAAGACTGCAACTCATGACTGGAAAACAAATCTCCACCGTCATCATCATCTTCAGAGAACGCCATTGTACACTCTCACAATCATATGCTCATcaaaatatatctatattttttctgtgtgcattttgttttaaaacatgtgggGTTGTAATATAACcaatttgtttgttcttttaatGAATGTCATGGTaaagaatgaatatatgaatactGTATGTGTGGTATATGTGAATGAACTAGCATTTTTCTTTTGTCAAGCATTATTACAAATGTTATAAGCCACAGAAGTTTAATTTATTGCTGAAGATACATATAACGATGAATGAACTGTGAGATTTTGAATAATAAAGCGCTATTAGAATATTA

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0007417 central nervous system development biological_process
GO:0007155 cell adhesion biological_process
GO:0001957 intramembranous ossification biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2185 Predicted to enable calcium ion binding activity; carbohydrate binding activity; and hyaluronic acid binding activity. Acts upstream of or within intramembranous ossification and skeletal system development. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in several structures, including dermatocranium; otic vesicle; paraxial mesoderm; semicircular canal; and ventral fin fold. Human ortholog(s) of this gene implicated in intracranial aneurysm. Orthologous to human VCAN (versican).

Ensembl:

ensembl_id ENSDART00000012522

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005943 lncRNA upstream 367772 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00005734 lncRNA upstream 443098 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005942 lncRNA upstream 456684 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005941 lncRNA upstream 465457 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005940 lncRNA upstream 711419 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00004580 lncRNA downstream 171269 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00005944 lncRNA downstream 255634 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005945 lncRNA downstream 260610 43523570 ~ 43525213 (+) True XLOC_002439
TCONS_00005946 lncRNA downstream 565367 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005947 lncRNA downstream 565367 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00004571 mRNA upstream 4324 43088270 ~ 43184354 (+) False XLOC_002436
TCONS_00004573 mRNA upstream 4324 43117777 ~ 43184354 (+) True XLOC_002436
TCONS_00004572 mRNA upstream 4708 43117661 ~ 43183970 (+) False XLOC_002436
TCONS_00004570 mRNA upstream 112471 43039947 ~ 43076207 (+) True XLOC_002435
TCONS_00004568 mRNA upstream 115155 43037064 ~ 43073523 (+) False XLOC_002435
TCONS_00004578 mRNA downstream 143836 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004577 mRNA downstream 143836 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004576 mRNA downstream 143836 43406796 ~ 43448996 (+) False XLOC_002438
TCONS_00004579 mRNA downstream 143959 43406919 ~ 43450588 (+) False XLOC_002438
TCONS_00004581 mRNA downstream 534170 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004569 other upstream 115422 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 1348645 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 2439780 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 2548874 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 2578725 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 1436857 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 1644808 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 1913460 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1974996 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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