RNA id: TCONS_00005940


Basic Information

Item Value
RNA id TCONS_00005940
length 2593
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_002424
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42470616 ~ 42477259 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGTAGGGTCGTGTATCACTAAAGATGATTATTTAGCATAAAACAATGTACATTTACCTTCATACAACATGAATTACAATGCATATTTGTATCATTTTCTCCATTATTGCATGAAAATGATCACTAAAACTGACAAAAGACtcaaagtatatataatatatgacaaATGGTGTTAAATTGAGAACTTATTTGTCAGGTATCTGCATTATAAGTGTGAGAGTGGGGTCTTGTATCACTCTAAAGATGATTATTTAGCATCAAACGATGTACATTACAAACATTATCCTTCATCCGACATGAATTATGATgcattatttgtataattttctcTGTTATTGCTTAAAAACAACCACTAAAACTGATAAAACActtcaattatatataaaatatgacaaaTGGTGTTAAATGTCAAATATCTGCATTAAAAGTGTGAGAATGGGGTCCTGTATCACTAAAGATGATTATTTAGCATAAAATGATGTACATTACCCTTCATACGACAtgaattaaaatgcattatttgtataatttttactATTACTGCATGAAAACAACCACTAAAACTGATAAAACactcaaattatatatataaaattaaatttatatgttaaattatgaacTTATTTGTCAAATTTCTGCATTGTAAGTGGGAAAGTGGGGTCTTTTATCCCCCTACATACAATTATTTACCATAAAATGatgtatattatatacattatactttataccagtggttctcaactggtttggccatgggacccacatttttacatggtcatcaagccgcgacccaaatttttaggaattataatatgatattaggaattataattcatttgtatttaattgttaacatacacgactagtgacagataaattatgagaaaatcaccaagacttacaaataaacaatattttattgctctcATTTAACAAAAtagatcaaattatagaaatattacagagtaaaaacgtcaaatactgtaaacagtggttagtgCAAGGAAAAGTtaagttaccatgaactaaactgaactgtttataaaacattaacactgatctgGTTGAACTGAACAGCAACCAGCAAACTGAagtaaacttattaaaataatcataaccaatTTATAATAATCAGCAGTTATTTGCTGTTCTGCatttgtgtgggctttcttggccattgctacacggtgagcacagtaagatgtacttgtacttgttttgaacatgaatatGTCAGGCACTAGTCGTCTTAGAAAAATAGTCCACTGGTTTTTCCTTGtaactgggatgtttggtttctaaatgtcgttttaatttaggttTCATTTCTCTCGTgaaagcacctcactacatatgacacactgaggttttaagcctttttgtcgtcaaaatatgtaaatccacactttacatattcggggtcgtacttgcgctggaatttcacatgtcaaaaggGTATATGAGGAGCTTACgttagtgttgttcccatactgataaacttccggtgccTGTTATTGTGgactttttttcccattttatacggttccttttacagcatcgatgttgtaatgtcattaaaatacattcatttagttgctcaagcgaaAACGAGaaaaaaagccgtttactcgcacacgcccctcagaatcagcaggctagcgcagaagctccattaaatatactggggtaaaataaatgctcatattataaagacatggcggggggaaatgtaatttaatgcggcGCTTCTTGTATAATCTGaggcccactttatatcggatatcactcagccagtggagatcgctcgatttttaaagaaaacagaccttaaacgcgccggttTTTGCATTGCAGTTCGCCAAAAGCGCTttacccaggttactggcaaattaaaagtcccactAGCATGTTTCGGCAcgtacatttcaaaataaaaagtccaatataagcaaaatactttaaatattaaacttttgttgtttttttgatcacacactccgcgacccactgtgggttgcgacccaccagttgagaaacactgctttatacaaCAGTAATTATAATACATTACTTATAATTTTCACTGTTATTGGATAAAAACAACCACTAAAACTGACAAAAgacttaaattataaataaaatgacaaatggtGTTTAATTATAAACTTATTTGTAGATATCTGCATTATAAGTGTGATAGTGGGGTCTTGTATGACTCTGAAGATGATTATTTAGCATTAAATGTTGTACATTATATACATTCTCCTTTATATCTGTAGTTTGGGAATCACTGGTTTAAtgaattataccttttactattTATTGTGTTGCTTTGGTGAGATCGCTTACGCTGAGTTTCGACTATTGAATTGTGCCtctgtaatatatttaaattaggtGTTCGCTTAAAAACACTAGAGTAGATATACTGTAGGCCTACATGACTGTGCCGATACCGCTCTGGTATTCTGTATTTTCTTGACGATGGAAAGTGACTAAAGTGTTTGGTGTTGACGTTCTTGTTGCCTTATAAATGCTTTAGTgcaaataaatctgcaaaaatgacaAACATGTAATTTTCTTCTGTCACTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004552 lncRNA upstream 110898 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00004551 lncRNA upstream 112872 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00005938 lncRNA upstream 487936 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004545 lncRNA upstream 520034 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00004529 lncRNA upstream 1509407 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00005941 lncRNA downstream 243582 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005942 lncRNA downstream 252687 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005734 lncRNA downstream 263826 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005943 lncRNA downstream 342467 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00004580 lncRNA downstream 956970 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00004556 mRNA upstream 10360 42462577 ~ 42463859 (+) True XLOC_002423
TCONS_00004555 mRNA upstream 11256 42423318 ~ 42462963 (+) False XLOC_002423
TCONS_00004553 mRNA upstream 95695 42374770 ~ 42378524 (+) False XLOC_002422
TCONS_00004554 mRNA upstream 95711 42374957 ~ 42378508 (+) True XLOC_002422
TCONS_00004550 mRNA upstream 101408 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004557 mRNA downstream 44684 42521943 ~ 42540839 (+) False XLOC_002425
TCONS_00004558 mRNA downstream 44720 42521979 ~ 42540729 (+) True XLOC_002425
TCONS_00004559 mRNA downstream 65258 42542517 ~ 42555822 (+) True XLOC_002426
TCONS_00004561 mRNA downstream 112132 42589391 ~ 42661445 (+) False XLOC_002427
TCONS_00004560 mRNA downstream 112132 42589391 ~ 42661445 (+) False XLOC_002427
TCONS_00004540 other upstream 634186 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1725321 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1834415 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1864266 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1865502 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 559874 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2222558 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2430509 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 2699161 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 2760697 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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