RNA id: TCONS_00005938


Basic Information

Item Value
RNA id TCONS_00005938
length 3287
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_002417
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41982997 ~ 41986283 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTATGCAAGCACAAAGTCTTTATTAGGCTACGATATAAAAGCAGGTCAGTGCAGCATTTTATTGCAAGCATACATACTACACAAAATAGATTACAATCCACATTTATTATAGTTAATAAATAAGAGAAAAACCCACCGTGAGAAATGCAAATGAGAACAGTGTATGGATCAGCTGCTTTTCCTCGGATTTCATGTGgattgacattaaaatggcatTAATAGACAATAAAGACAGACATGGTATACATTAAGCAATATTTCACATGTTTCCATAacgttttaaaaattattttaaaaaagcctacagaatacttttaaaaaatgtatttttttttttgctatagtgCTGGGAATTGttcccaataaaataaaaatatagcctACTTAAAGATCTATGAGATTTATAGCCTATGATTAATGTCGAAGATCCTCTCCAGCTATCCAGAACAGAAATGAAAGCGCACATCTCTATACATAGAGTTGAAAGAGAAAAAATGCAACTAgctaaaatatataaactgaTGATCTGGTTTTAGCCCTTCTGTCCTGCCCTTAGAAACAGCTTACGTTCGGAGGATACGAAAATAAAGAGGATTTTCCTAATTAAACAGCACTAAAATGGCCTCATGACCCACTTCAGCCTCGGTCACCACGTCTCCAGTCCTTCTTTTCTAGCATATTCAGACACCAGTCCTACTTTAGACTATGGCAGAGAGACAGAATAGTAATGGTGTGCATGCAGAGACCAAGCGTGAATCCTAACCGCGGAAAACAGATGGCGCGTTTCCTTGCGCAATACAATTCTGCTTGATAAATTGGAATTGGCGTCGCCCCAAAACGCACAGAAAAAGGGGAAatagagatttaaaaaataataaaatcaaattccACTGATGATTTACTTGGGAATTAATAATATCCGAATAAACTGAGAAGATTTACACTACCATAAATTGTGCGAACACACGACGATTTGCATACCACATACCGGTATGTGTTGCAACAGTGTGATAAATTCAGCAGAAGATCTGAGAAAGCTATAAGCAGTGCGCAAATCCTGCATGCATCACGTCAAATGCTCCTTTGAAATGGCTGGCGAATAAACTGCGCCGAATGTTCTTGAAAGGGGGACGAGAGAGAGAGCACAGAGGACTGGATATTCCCTTTGTACTTGCTGATTGAAATGCCACACAGTGTTTGAGACTCTTTCTCCGACCTTAAATGGTTAGGTGGGTGCAGTCATTTCGCGGCAGGCGTCCAAGCTCTCAGATTACTGCTGTGTGCTTTGTGCCACAGGGTTTCCAGAGCTTAGCGTCGAGGGCGCGCTTTACGCACAAGAAATGAATGCGAGTTTTTGTGCAATATCCTGCTTTCTTAAAGAGCGAGCACATCTTGTCGATTTGTTTGCAATGATAGCCACGTATTAAAAGGCAAAGTCAGTAGAAACCGACAGACTGACAGCCTCGCCCATAAATGGCGCAGCAAGCTTTCCTTTCCACAATGATGTCCTTGTGAAGACGCCATGTTGAAAATGAGAACAGCAGACAAGCCATTAAACAACAGGCTATTTCTGAGGTCGCCTGGACATGGGTCAGCAATGAGAGGTGTTtagaataataatttttacacCTTTATCTgtctattttttaaacaaataataaaaatacacagtGAGGAAACAATAATTGTACTTAAAGGCAAATGTGACTTTAAATGTAAAACGTTTAAACAAACATTCccaattttgtgtgtgtgaaataaggTCGTTTAAACTATTACCTTCGTAAAGAGAAAGGAAATCCCTCTCAGTGGTGAAGGACGAGTGAATTTCTCTTGTCATTCTGTCTTCaggaagagaaagagagggaTTGTTTGCATATTGCAATATCTAAAAGTGCCTCAAGATTTCCATCAGCTCCACTCGCTGGAGACTGCGCAGATATGTGTGTTAAATGGTGAATTATGTCGaaaaagacggcagaaaatggttATTGTCGTTTTCTTCCTTTTAGGCGTTGCAACCCAACCCCCCATCTTTAAAGCCAGTGTGTTAAAGGATCCGAAGATGGGAATGAAAACCTTCCCGTTTCTCCATCGTATAGGCCTGATAGATTTATTTCAACAAAATGTTAAGGTAAATATCTCTGCTAGTGTATTAATAATTATGTATGTTCAAAGTCGTATTTAACAGTTTCTGTTCGATGTTGTGTGGCTAGTAGTGTTATAAAATGAAGGTTTGCCCTTGGCACAAGGTCAGATAtacattactaaaaaaaaagcaaagggaTTTACTTCCATTCCATTGTAAAACCAGGAATACATCAATCCCAATCTGCACACAATGAAAGAGAAGTGAATTCcacatgattatttaaatataaaatgtactttttctCTTCCAAAAAATGTGTTTAGATAAAAATTCTGCTGTGGGGTTACAAATAGTGAGGCGCAACTAGGATGAGCATTAAAACAACCACAAACCCTATCAACCATACCTGTGATTCAGCATTTTTGTAAAAGGCCAATCGTCCTTTTTTCTCTTTGGCCTGCCTTGTTTGCTGAAATGTGAGAAGCAATCAATTTAAATGGAGATTTAAAAGAGAACAGCATGCAACTGAATGTATCTGAAGACAAAGCTTGGCTTTAAACTAAAAATCACACATAGggagcactgaaaaaaaaaaatagaaaaaccaGCCATAAAATGCCTTGGTTTAAATagcaataaaacatttattttgcagcTAAATAAGCAAAGATAACAAAGATAAACTTACTTATTGATTAATGATTGGCCCTAAGCAAGGCAGGGCCTTAAAAGCAGTTGGCAATTTTcatgtgtttttctttctttctttttctaaaCATCCTAGTTAGTAATATAAaatcaaaatacaaaatttttATTCGGTAGCATTTGACTAAAGAATAAAATACTGTTATATGGGTGTGCCATGACCTAGTTTGCTGGGACAAAGATGGTTTCCAGGAagagaaaaaaagtgtaaaaatgtcaAAGGGATATCATCCAACATTTCATCTTCCTTCTTCTCAGATCCTGCAAACAGAAACACTGTATGTATTAAATAGTCCATAAAAGGCTGATGAAATCAAGATTTAGATCCCTTTAGGAACAAAGGAAACCCATTTTGACCATTGAGTCCCAATGTAGGAGAAAATGGCTGCGCCTGCATACAGCCTTCTTTCTGCTCTCTGTAGGAAGAACTGAAGGCTGTGCTTCTAATAGCTGAATCCACCGTGGTGCTTCAATCTGATTGGCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004545 lncRNA upstream 28812 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00004529 lncRNA upstream 1018185 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00005733 lncRNA upstream 1352503 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 1446471 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005937 lncRNA upstream 1701995 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00004551 lncRNA downstream 372328 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 376222 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00005939 lncRNA downstream 484333 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005940 lncRNA downstream 487936 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00005941 lncRNA downstream 734558 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00004543 mRNA upstream 23063 41945890 ~ 41959934 (+) False XLOC_002416
TCONS_00004542 mRNA upstream 23203 41939963 ~ 41959794 (+) False XLOC_002416
TCONS_00004544 mRNA upstream 23203 41945976 ~ 41959794 (+) False XLOC_002416
TCONS_00004541 mRNA upstream 61580 41914084 ~ 41921417 (+) True XLOC_002415
TCONS_00004539 mRNA upstream 165888 41765944 ~ 41817109 (+) True XLOC_002413
TCONS_00004546 mRNA downstream 402 41986685 ~ 42020340 (+) False XLOC_002418
TCONS_00004547 mRNA downstream 426 41986709 ~ 42022566 (+) True XLOC_002418
TCONS_00004548 mRNA downstream 173188 42159471 ~ 42162806 (+) True XLOC_002419
TCONS_00004549 mRNA downstream 183699 42169982 ~ 42179824 (+) True XLOC_002420
TCONS_00004550 mRNA downstream 372143 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004540 other upstream 142964 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1234099 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1343193 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1373044 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1374280 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 1050850 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2713534 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2921485 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 3190137 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 3251673 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU414886 True 3404 lncRNA 0.37 1 CI01000158 660156 ~ 663559 (-)