RNA id: TCONS_00004543


Basic Information

Item Value
RNA id TCONS_00004543
length 1680
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_002416
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41939963 ~ 41959934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtcATGGGCACACCGAAAGGAAACGCACAAAGTTTACAGACAGAAGCTGGAGGAGCTGACGAACCTGCAGGCCATATGCAGCAGTGCCATTAGCAAACAGAGAAAAGGCCTGAAAGACCTCAAGCAGAGCCTTTATAAGTGTAAGAAAAGTTGCAACGGTAAAGATTCGGAGGTGATAAATGACCTGCAGGTCCAAATTAAAGAAAGACAGAATGTCTTTTTTGACATGGAGGCCTATTTGCCAAAGAGGAACGGGTTGTACCTAAATTTGGTCCTTGGAAATGTGAATGTAACACTTCTCAGCAATCAAGCCAAGTTTGCGTACAAAGATGAATATGAGAAGTTCAAACTTTATATGACGATAATCCTAATGTTTGGTGCCGTCACCTGCCTCTTCCTTTTGAACTACCGGGTCACAGACGAAATCTTCAACTTTTTATTGGTGTGGTATTATTGCACATTGACAATAAGAGAGAGTATCCTCAGAAGCAATGGCTCACGAATTAAAGGATGGTGGGTGTCACATCACTACGTCTCAACTTTTTTATCAGGTGTCATGTTGACATGGCCAGAAGGTCCCATGTATCAGATGTTCAGAAGTCAATTCCTGGCTTTCTCCATTTATCAGAGTTGTGTGCAGTTTCTTCAGTATTATTATCAGAGCGGCTGCTTATATCGGTTACGGGCTCTGGGGGAAAGAAACCAGCTGGACCTGACAGTGGAGGGGTTTCAGTCCTGGATGTGGAGAGGCCTCACTTTCCTCCTTCCTTTTCTATTCTTTGGCCATTTTTGGCAGCTCTACAATGCTGTGACTCTTTTCAGACTGTCTGCTCTTGACGACTGCAAGGAGTGGCAGGTCTTCATGTTGGCCTTGACGTTTCTCGTGCTGTTCCTGGGAAATTTCCTCACGACTCTGAAAGTGGTTCATCAGAAGCTCCTGAAGAACAAAGACAAGGTGAAAAACAACTGAGTCTCTGCGTCAGACTGATACTCAAAAGCGCACAAAACTCTTTCGTCCCTCCAACGGTTTGAGGGAGATGTTGACGTCTCCTCCAACTCGTTAGGAGACTCAAGTTTCCGTGTCACGTCGCCCTGCGTTCTGCTGTGTTGTTTTTGCTCTTTTTCACATCATCTCAAGCAACGTTTGGGCTCAGAAACCCACTGACAAACTTCAGACACTGTATACCCAATATGTGAGGATTGTTTCGTTCCTGTGCATGGATATGTTTACAAAAAAAGCCACTTTTATACTTTATGCAATGCAGCAGGAAGGCTGTAGAAGTGCGCACTCTCAAAGGGATTCGTTAGCGTTCATAATAAAGCTGTTAATTAAAAACACTTGCATTTCAGCTGCAGCAGACGTTACATATATGTGGGAAAGCATTGATACTTAATGCCACTTGAAGGGAAGGGTGTGTTTTGCACGTCGTGGCTTGTTAGTACTGTTTCAGCAAGGCTAACTTCTTGAATTTAGGTCACATGATGAACGTGGGGATTTATGTTTTTAACAATGGCAATAAAGTAACACTTTCGTAGTATGTTTGAGTCAAAATCACGCCTCTGGTAATTGTCCACCTTTTGTGTTTGAAGGCATAAACGTGTGactttattttaaagagcccctattatgcattataaaaggtcatattttagttttgggggtctccaacagcaagct

Function

GO:

id name namespace
GO:0045444 fat cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-49 Predicted to be involved in fat cell differentiation. Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human TMEM120B (transmembrane protein 120B).

Ensembl:

ensembl_id ENSDART00000063013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004529 lncRNA upstream 981078 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00005733 lncRNA upstream 1315396 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 1409364 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005937 lncRNA upstream 1664888 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005936 lncRNA upstream 1811485 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005938 lncRNA downstream 23063 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004551 lncRNA downstream 398677 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 402571 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00005939 lncRNA downstream 510682 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005940 lncRNA downstream 514285 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00004541 mRNA upstream 24473 41914084 ~ 41921417 (+) True XLOC_002415
TCONS_00004539 mRNA upstream 128781 41765944 ~ 41817109 (+) True XLOC_002413
TCONS_00004538 mRNA upstream 128803 41765616 ~ 41817087 (+) False XLOC_002413
TCONS_00004537 mRNA upstream 210387 41668483 ~ 41735503 (+) True XLOC_002412
TCONS_00004536 mRNA upstream 336725 41549819 ~ 41609165 (+) True XLOC_002411
TCONS_00004546 mRNA downstream 26751 41986685 ~ 42020340 (+) False XLOC_002418
TCONS_00004547 mRNA downstream 26775 41986709 ~ 42022566 (+) True XLOC_002418
TCONS_00004548 mRNA downstream 199537 42159471 ~ 42162806 (+) True XLOC_002419
TCONS_00004549 mRNA downstream 210048 42169982 ~ 42179824 (+) True XLOC_002420
TCONS_00004550 mRNA downstream 398492 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004540 other upstream 105857 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1196992 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1306086 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1335937 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1337173 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 1077199 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2739883 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2947834 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 3216486 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 3278022 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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