XLOC_002411 (CABZ01049847.1)


Basic Information

Item Value
gene id XLOC_002411
gene name CABZ01049847.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41549819 ~ 41609165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004536
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattattattattattatcttacctATTTATTTTTCTACCCCTGGCATCTGTTTATACTTTGTATAACTGAAagaattgatttcattttattttatttatttttattatgttcataACTGTTGTGAGATGTATCTCATGTACTATGTTTGTAAATACtactacaataaaaataaataaataaagataataataaataaataaatatactaacGCATGGTCTCCGAGGACTTCGGTACCAAACTTACAAAACATCAAGTCTGAGTGGATATCCACTTCTCTATTGCCATGTGACCTCCAGTTCTTCTCTCACACTTCAGTTGCCAGTAACTTTCTAATCTCTCGGGTAAATTTACTAACTCCTTCATTCCTTCAGTCCGCCCCCATGCAGCACTAAAGTCAGAGAGACGCGAGCGCGCGCTTCATTACACTGTACCTGCCGGTCGGGCGCTGATCAAATCTTCAATCATGGCCAAATCTCAGTCGAGGCGATGCTGCTTTTGTTTACTCGCTTTAGTGTGCACTGCTGCAATTATCTGCATTTGCATACTTTTCAGCAAACAGAAATGCGACTTTACTCGGGCCGCTGTTTCTGCGGACTCTCTCATGTGCTCCGACATCGGCAGGGATATACTGCGTCAGGGCGGCTCGGCGGTGGACGCAGCCATCGCAGCACTTCTGTGCACTGGACTGGTCAACCCGCAGAGCATGGGCTTGGGCGGAGGCTCCATCTTTACCATTATGGACAACACAGgCAAAGTGAAAATCATCAGCTCAAGAGAAACAGTCCCGAAAGGAGTAAGAAGGGATTTGCTTAAAGATTGTCCAAGAGTATTGGCCATTGTCACAGGTAGTCAATGGATCGGTGTACCTGGAGAGATTCGCGGCTACGAAGAGGCTCATCGACTGTATGGAAAGCTGCCGTGGTACAAACTGTTCGAACCCTCCATCAAACTAGCGCGAGAGGGATTCCCGATGCCAGAATACCTCAGTCAATTCATACAGCATGCCTATATTAAGCAGATTCTGTTCTCGGGAACTGGACTCTGTGAACTGTTCTGCAAAAACAATAACACAGAAGTCTTGGGCCCAGGGGACACACTGAAGTTCCCTCAACTCGCGAAAACTCTGGAAACCATTGCCAAAGAAGGAGCAGATGCCTTCTACTCTGGAAAAATAGCCAAGGATTTGATACAGGATATACAAGCTAGAAatGGAGCATTATCATTAGATGATCTGAAGAATTTTAAGGTCAGAGTCAGTGACCCGTGGACTGTAGATTTGGGGGAATATAAGATGCACTTCCCTCCTCCACCAGCAGGAGGAGCGATACTCAGCTTCATCCTCAAACTAATGCACGAGTTTGGCCTTTCTCCAGCCTCCATCCAAGGCGACCAGAAAAACTTGACTTTGCATCGGTATATAGAAGCGGTCAAGTTTGCAAACGGCCAGAGGCGTTTCCTTAAAGACCCCGAGTTCAACTCTGGAGATATGAAGTCCGTCACAGATGAGAAGTTTATTAAGCAGATCCGAGCTCTGATTACTGACAGCGGCACACATGAGGACTCTTATTACAACATTACGCCGGCTGTGGATCGCTTTGGGACCACGCATGTCTCAGTGCTGGCAGCAGATGGCAGTGCAGTTTCAGTCACCAGCACCATCAACCACATGTTGGGATCAGCTGTTTATTCTCCTAAAACGGGGATCATCCTCAATAATGAGCTTGTAGATTTCTGCAATCGAGCAGATTCTGTCACACCAGGTGAGCAGCCTCCGTCCTCCATGGCTCCTGCTATTCTGCAGTCTCAGCAGAAAACTCTGGTGATTGGAGGATCAGGAGGAAGCATGATCACTTCCGCCATGGCCCTGtCCATTATGAACCATCTGTGGTTTGGGATGAACCTCAATGACTCTATCGCTGCTAAAATAGTCTTTGTTGGCTCCAATAACATGGTCAACTTTGAGAAAGGTTACGACAGCTCTGCTATTAAAGCCATGGAGAAATTAGGACACAATGTAATGTACAATCCATACTTTTTCAACGTGGTCAATGGCATCTCCAAAGAAGGACAATGCATCAGTGCCATATCTGACGCCAGAAAACAAGGCCAGTCTGCAGGATACTGACCCTGCCATCCACTTTTAAGACAATACTCCAGTGATTCATCAAGGCCTGCAGGAAGTGAGGGTGGAAGTAAAGGGTCAGCACTTCCTTTTCAGAAACACAGTAAATTCAGATACAGGCTGAATTTGCACAAGGGGTCCGTCCATGTCTGCTGTTTTGGACTCTTACAAAACAGAATTAGTATATGTTTTGAGTGCGTGTGAATATTTTGTATGTAGCAAAAAATTGAGGCCAGTTTTTTTTAAGGATGAACCGTTCTTACAAGATGGTTATGATGTGTTTAATGGTCATTGGCATCTTAAATTcttgaaaagtttttaaaattcagatttttttttaaacatatgttttacttaagctatactttgtattatatcatatatttcatttgttttccttttgctatgtccctttattcatcaagggttgctAAAGCAGAATGAACTCTgattgttgtactctcccatttacCACGCTCTAAATTTACTCAAATGTGACAAGGGTCCATTATCCAACTTTTTTTggtaactttttatattttaaggtgtccttgtacagtacttactgtatGGTGTCTACTGTAAATGTACTTTTAGTAATAGTGTTgagtaagttacttcaaaaaggTAATTACATCATATAAATGAACAATATCAcaggagtagcagtgcgatatggctgtatattggcactggtgggaggcgtgcgttgtaCCCCACCAGTgactactcatgtgatattgcatttatacaaaagttcgatggcataatcgtgtatacaaaatgtaaaatcaaacacagaggctgcgttcgaaaccgcctactactcagtaggtactgcatttaaatttaaacgtacaACTCGGCTGTAAGAAATATAAAGTTCTATACAGTAAGAGTATGAGCActatggaattcggacgtactacatccgccattttgtcatggtcacgtgatctACCCACGTCATTCGCGTCGTTTCACTCatattcatgaattttttcgtggggcatcatgggatagcgcagcgtgcatgggatgcacactccagaatctcgccggaagtagtaagtcatccgggtacttctcgcatactgatttttgaattctattcCTTacagacatactactcagctcgcatactgatttaagcgcactatatagtatggaagtatgcgtttTGGACGCAGCCAGAGTCTAacaacccttttgtatgaggaactactttcttccaccattcattcacaccTGCAGCTGTCGTCAGAACAACAGAAACTGCTCACgacactttagagctagtatatgaatgattctctagcttaatgtctaaagtgatgacaaaacaggtgattttgctcacattttataaGGCTGACCGACATGAAAtggcatcagtctacagagatttcccagtatttctctgctgcaatcgggaaatcacaataattaatcccAGAATGCTAAAGCAGGTccaacactaccagattactgttgtatTTGTGATAAGAAAAAGCGCTAAACACatgtgggcatttcttctttctttctgtttactgaactagtttGCAATAACGAAAACAgtagactcattagaaacaaacagatggcaaaaaagtaactcagggtcatacaaagagtggccagcacaaaatacatacattcctgatatgcgagtcctAGCTCagactcaatacactacaattactggTATAAATACAGCTTAATACCATATAAAAGAGAGCGATCGAaatagaaagtcacttaccagttttataatgagttgctcagctgtagtttaaaattacgctgAACATGGATGGCGCTGTATAAATacttaaaataggcactgtccttataaataaactgcacagatgcaatctaaacaactacattctcgactaaaaagcctcaaaagtaccttatgttgtctaacagctgcaatatttgtcaatctgtagtgagtttattaatctgctgtcactcgatgtgggcgaagtaatacacaagggtaagGAGGCTATTAGCcagtcagattcaagaaccagacagaactgttgtataaactgaattaaatgtacttttccaatttttttgtttgaaaagtaACTTGATAACTCAATAACAAATTTAGTTACTtgacaacagaaaataaaatctaaattctttaaagtttattttatttttatctttgtccTATTGGTATTAtatacagtggcgtagcggatgggccccgcgtcgtcgcgattttcaataattgaaaatccaccggcaaccgcaataatcaaactcttgggaacaactgtggtcggaaccaaagttcacagatctgtgttctctgaacacctctcaagtggtggactaCTTTATTCTGATTGATGGCTGCCGAACTGCGTCATAACATTGctcaaagttgacttgatttgatCTCTCCTTGACGCTCAcacaccggagaagacgcgcCACGCTGTTTATCGCCaccggttctcattgaaaatgaatgacttctggctactttgacgctctcgccactttccgtttgtgatcgctcctcagtttgtaaaGGCTTCCCCatgttgtcgctccaccccgcctgcCTTCCCCGCTCCTTAATTTGTGATCGCTTTCCCGCGTTGTCCCCCCCCCACCCACCAATCCCCgccatcagggggccccgtcagtgatccctgcagaggggcctccgcattttgcgctacgccactatTTATATACATCTTGTAACTACTTAGATAATATgtgattatttttcttattatggCAATCGTCACAATTTAACAAAACTATAGAGTTTGAGTCCTAAAATCAACTGCTAgtaactaataaaaacaaatagacaataaaacaaataaactaaataaccAGTTCAACTTACTGTAGATTCTTGAAGTAAAAACTTAAACATATCACAAGAGGATattaccatagactgtaaaagatatggacgtagtatctgtcACGTCACCCATAGCTTTctgaagaacacaaaagaagaaactagtcggcgcggccaaccgtcgctaTTTTGTTAGCGCGTCATCATCACACCAACCggaggataccaaacaagggcaaagaggcggagctacagacatgctagcattttgcttagaccggctgttctttgggagaaacgcttaatacttcattacctacGACTCGTTTaagttctgaccacatgtgcttggttgtacactatatcaataaagtgtttagccttttaaaaacactgctgtaacacattgagccactaaacattgttcttatgacgtttttcaacaggaggaaaatgcaaattacttccaaacacttcagatatagtctgtgttagttaatgcaagGTTATTTATGAAAACCAGGCATAACACCGTATGACAACACtttagatgactgttctagagcctacagctaatcaatctgtcagattctggagtgctttacagctctaaagaaaaatatatatgataaatgatatgaaataaaacaaatacatttatagagatggtatataataagtataagtatataacttcactcaaaagggaaatggaggccacttgaatggtttgtgagcacaattaagtgcacacagcatgctatagtatctgataattgtagaaaataattccaaaaggctattaactgtgtaaagccacataaaaccaCAACAAAAAAATACGATATATACACCAAGTTcggcagctaatcagccggaatcagctgaggtgaagtgacggcacACAGAAAGACCtatagctgtcactcaagtggccacaccctcaATTATGCAGACTTAAATATAACTTAATTAGACGcaatggatgagttataaaaatattcacCCCTACACAGATGCCATAAAGCGTAATGTTAGCtctatgaaccaaaatcgttctttgtaccaggctgtaaacacctttttttctgctgtaaagttggaaatctgctctattatggagcgataattgcagtttcagttacttccgtttTAGCTTCCCGAGGGAAAGCGGGAGGTTGTCGCTTGGATATTACTGATGTACtgtctgttttaaataaaatatgaaaatccaCCTTCTATCAGGCAtttaacaaataagaaaaaaaaatctatttttgggACAATTGAATCAaaagaggtaaaaaaaataaaaataattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078258

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004536 True 6452 mRNA 0.40 12 41549819 41609165

Neighbor

gene id symbol gene type direction distance location
XLOC_002410 prlhr2b coding upstream 289252 41252525 ~ 41260567 (+)
XLOC_002409 adrb3b coding upstream 335151 41199660 ~ 41214668 (+)
XLOC_002408 anxa4 coding upstream 356938 41159241 ~ 41192881 (+)
XLOC_002407 antxr1b coding upstream 503044 40973524 ~ 41046775 (+)
XLOC_002406 CU571179.1 coding upstream 585007 40939664 ~ 40964812 (+)
XLOC_002412 lrrc75bb coding downstream 59318 41668483 ~ 41735503 (+)
XLOC_002413 rnf34b coding downstream 156451 41765616 ~ 41817109 (+)
XLOC_002414 BX005006.1 coding downstream 230754 41839919 ~ 41840033 (+)
XLOC_002415 orai1b coding downstream 304919 41914084 ~ 41921417 (+)
XLOC_002416 tmem120b coding downstream 330798 41939963 ~ 41959934 (+)
XLOC_002398 BX001050.2 non-coding upstream 800921 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 910015 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 939866 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 941102 40607701 ~ 40608717 (+)
XLOC_002417 NA non-coding downstream 373832 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 861451 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 1111676 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 1120781 42729946 ~ 42731994 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00503792_00513447 NA coding CI01000158 null 502231 ~ 514879 (+)