XLOC_002413 (rnf34b)


Basic Information

Item Value
gene id XLOC_002413
gene name rnf34b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41765616 ~ 41817109 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004538
gccTGCTGGGTTCATTTTCCTCATTGATTAATTTGAGGGTTGgagtataatttaatttaattagcacGGCTAGCCGAGCAAGCCGTGCATAATTATACACATAATCCGCTTCTAAAGTTGTTCTAATGTGTTGAGAAAACACCTTCACAGTGTCGCTGCACCAACCCGATGCATGCACACATGCGTGCCGCTTAGCCACGCCCATTCGCCGGATGGAGCGACGCCGATTGGCTGCTATACATACCAGCGGACCTTGCTATTTCAGGATTGGCGGAGCCGCGCTTTGCCATTACGTTATGCTcttttctacacacacacacacaaggatgaCAGAAAGAGAAGACGTAATGGAGTGCTCCTGAGCGTCCTTGCCAtgaaaatcactttaatattcGACAGTTTTCACAGACGGGAGTTGCAATGAAGGCGGGGGCCTCCTCCATGTGGGCATCATGTTGCGGGCTGCTGAACGAGGTCATGGGCACTGGGGCTGTCCGCACTCAGCAGCCGGGCTTCGGAGCCGGAGCGGGACCGTTTCGATTCGCCCCGAGCGCTGGATACTCCACATACCCACCCAGCAGCACCACCTCAGGAAGCGCAGGCCTGGCGTGCAAAGCCTGCGGACTGGCCTTTTCTGTGTTCAGACGGAAGCACGTCTGCTCCGACTGCAAGAAGAGCTTCTGCTCGCTGTGTTCGGTGCTGCAGGAGAATCTGCGGCGCTGCTCCACCTGCCACCTGCTGTGGGGAACGGCCTTCCAGCGGCCCCGGCTCATGCGGCTGCGCGTCAGAGACCTGCGGCAGTACCTGACGCTGCGCAACATCAACACCGACACCTGCAGGGAGAAGGAGGACCTGGTGGACCTGGTGCTCTGCCATCTGGGCGCTGAGCTGGAGCTGGGGGAGgacgaggaggaagaggaggaggaggaagaggaagcggATACGGACAGTCTGCCGTCACTCCCGCGCTCGCTCTCCACGCCGCCGGCCTCTGCAGCGCGCTCGTCCTCCCAGCAGTCGGCGCTGTCTGCGGCCGCGTCTCAGGGAGAAGCTCTCAGCCGCAGCGATAGCTCAGGGACAAACAATCAGGATCATGGAGATGCTGCGTCAGTTTCCCTCCTCAACCTGGAGTCTCATGACGACATGCTGGAGGCGAGTCCAGCGACACAGCGGCGCGCTCGAGCCTCGCTCTCGGATCTGGCCCACGAGGACGACATTGAGAGCCTCACAGTGCGGCAGCTCAAGGAGATTCTCGCACGGAACTTCGTCAACTTTTCCGGCTGCTGTGAGAAGTGGGAACTGGTGGAGCGAGTCCATCGCCTGTACAGAGAGAACCAGCTCAACAGAAGATCCAtggaaAATGTAAGCAACAGTCTTGCTGCAGATGGTGTGCAAGTGGCTCAGCTGGGCGGCGCTGATGAGAACCTGTGCCGGATCTGCATGGACGCCGTGATCGACTGCGTTCTGCTGGAGTGCGGGCACATGGTGACCTGCACCAAATGCGGAAAGAGGATGAGCGAGTGCCCCATCTGCAGACAGTATGTGGTGCGCGCCGTGCACGTCTTCAAGTCTTAA
>TCONS_00004539
gaCAGAAAGAGAAGACGTAATGGAGTGCTCCTGAGCGTCCTTGCCAtgaaaatcactttaatattcGACAGTTTTCACAGACGGGAGTTGCAATGAAGGATGCATGTATGCTCACTTCAGCTCATCGATTGTCCTCCTCTTGAACAGAAGATGCTTTCTTTCGAGATCACGCCATGTTCAGTCACAGGCACTGATGAAAGCTGCCGGCGGGGGCCTCCTCCATGTGGGCATCATGTTGCGGGCTGCTGAACGAGGTCATGGGCACTGGGGCTGTCCGCACTCAGCAGCCGGGCTTCGGAGCCGGAGCGGGACCGTTTCGATTCGCCCCGAGCGCTGGATACTCCACATACCCACCCAGCAGCACCACCTCAGGAAGCGCAGGCCTGGCGTGCAAAGCCTGCGGACTGGCCTTTTCTGTGTTCAGACGGAAGCACGTCTGCTCCGACTGCAAGAAGAGCTTCTGCTCGCTGTGTTCGGTGCTGCAGGAGAATCTGCGGCGCTGCTCCACCTGCCACCTGCTGTGGGGAACGGCCTTCCAGCGGCCCCGGCTCATGCGGCTGCGCGTCAGAGACCTGCGGCAGTACCTGACGCTGCGCAACATCAACACCGACACCTGCAGGGAGAAGGAGGACCTGGTGGACCTGGTGCTCTGCCATCTGGGCGCTGAGCTGGAGCTGGGGGAGgacgaggaggaagaggaggaggaggaagaggaagcggATACGGACAGTCTGCCGTCACTCCCGCGCTCGCTCTCCACGCCGCCGGCCTCTGCAGCGCGCTCGTCCTCCCAGCAGTCGGCGCTGTCTGCGGCCGCGTCTCAGGGAGAAGCTCTCAGCCGCAGCGATAGCTCAGGGACAAACAATCAGGATCATGGAGATGCTGCGTCAGTTTCCCTCCTCAACCTGGAGTCTCATGACGACATGCTGGAGGCGAGTCCAGCGACACAGCGGCGCGCTCGAGCCTCGCTCTCGGATCTGGCCCACGAGGACGACATTGAGAGCCTCACAGTGCGGCAGCTCAAGGAGATTCTCGCACGGAACTTCGTCAACTTTTCCGGCTGCTGTGAGAAGTGGGAACTGGTGGAGCGAGTCCATCGCCTGTACAGAGAGAACCAGCTCAACAGAAGATCCAtggaaAATGTAAGCAACAGTCTTGCTGCAGATGGTGTGCAAGTGGCTCAGCTGGGCGGCGCTGATGAGAACCTGTGCCGGATCTGCATGGACGCCGTGATCGACTGCGTTCTGCTGGAGTGCGGGCACATGGTGACCTGCACCAAATGCGGAAAGAGGATGAGCGAGTGCCCCATCTGCAGACAGTATGTGGTGCGCGCCGTGCACGTCTTCAAGTCTTAACGCCAGCTTCACTTCCcactgg

Function

symbol description
rnf34b Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RNF34 (ring finger protein 34).

GO:

id name namespace
GO:1902042 negative regulation of extrinsic apoptotic signaling pathway via death domain receptors biological_process
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-31 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RNF34 (ring finger protein 34).

Ensembl:

ensembl_id ENSDARG00000054036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004538 False 1575 mRNA 0.58 7 41765616 41817087
TCONS_00004539 True 1377 mRNA 0.60 8 41765944 41817109

Neighbor

gene id symbol gene type direction distance location
XLOC_002412 lrrc75bb coding upstream 30113 41668483 ~ 41735503 (+)
XLOC_002411 CABZ01049847.1 coding upstream 156451 41549819 ~ 41609165 (+)
XLOC_002410 prlhr2b coding upstream 505049 41252525 ~ 41260567 (+)
XLOC_002409 adrb3b coding upstream 550948 41199660 ~ 41214668 (+)
XLOC_002408 anxa4 coding upstream 572735 41159241 ~ 41192881 (+)
XLOC_002414 BX005006.1 coding downstream 22810 41839919 ~ 41840033 (+)
XLOC_002415 orai1b coding downstream 96975 41914084 ~ 41921417 (+)
XLOC_002416 tmem120b coding downstream 122854 41939963 ~ 41959934 (+)
XLOC_002417 NA coding downstream 165888 41982997 ~ 41986283 (+)
XLOC_002418 setd1ba coding downstream 169576 41986685 ~ 42022566 (+)
XLOC_002406 CU571179.1 non-coding upstream 800804 40939664 ~ 40964812 (+)
XLOC_002398 BX001050.2 non-coding upstream 1016718 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 1125812 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 1155663 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 1156899 40607701 ~ 40608717 (+)
XLOC_002424 NA non-coding downstream 653507 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 903732 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 912837 42729946 ~ 42731994 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00591669_00605345 NA coding CI01000158 null 591669 ~ 605584 (+)
bowfin (Amia calva) AMCG00018758 NA coding CM030135.1 CM030135.1 19874328 ~ 19889731 (+)