XLOC_002407 (antxr1b)


Basic Information

Item Value
gene id XLOC_002407
gene name antxr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40973524 ~ 41046775 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004530
GAAGAAAAATACCCTCATCAAAAGGTCCATtctgagaaagagagaaaaacaaagagaaagagagagagagagagagagagagagagagagagttaaacTGTTTTCCAAAAAAGTATCCATGTGCCTCCCTCTCTTTATTCCAGATGAACCCCAGTTTTCATGCAAGACCCAAACACCACCAGACCGAGTCCAATGATTTGCTGAAGTTTTCAAACTAacccaagtgcacacacacacacacacacacatgtgaggGCCTGAAACACATCTGCAGCAGTATATTAGAGTTATCTGACTGAGGACTGGAGCTCCAGACTCCAGCCTGGATGGATCAGTGGCTCCAGAGGACATCGTCTCTATTAAAGCTGAGGCTGTTTTTGCATTGACTTGTGCAAGGGTTGCAATTACCAAACTGGAATAATGTCCTTGGAGTGGAGCGGAGGCTTGTTTGTGATGCTCATCCTGAGGCTCAGCTGTTGTGCTGGACAGAGCTATGAACGCTGGGAAGCCGGATCCTCGTGCTACGGAGGCTTTGACCTCTACTTTGTGCTGGACAAGTCTGGAAGTGTGCAGCACCACTGGAATGAGATCTACTACTTCGTCGATCACCTCGCACACAAGTTCATCAGTCCACAGCTCCGCATGTCCTTCATCGTCTTTTCAACGGAGGGACGAATTCTGATGGAACTGACAGAAGACAGggatCAGATTCGTGCTGGGCTGGAGGAACTTCAGCGAGTCCTACCAGGTGGAGACACCTTTATGCACAAAGGTTTTCAGAAGGCAAGTCAGCAGATTTACTATGGAACAGGTGATGGATACCGCACGGCGAGCGTCATCATTGCTCTGACAGATGGAGAACTTCGCGAGAATGAATTTGACTTGGCAGCCAGAGAGGCCGGCCGCTCGCGTCAGCTCGGAGCTTCTGTCTACTGTGTCGGAGTGAAGGACTTTAATGAAACCCAGCTGGCAACAATAGCTGATAGCAAAGATCACGTCTTCCCGGTAAATGATGGCTTTGAAGCGCTGCAAGGGGTCATTGATTCAATTCTGAAGAGATCCTGCATAGAGATCCTCGCCGTGGAGCCTTCCAGTATTTGTGCCGGAGAATCCTTTGAGGTGGTGGTTCGTGGAAACGGATTTCTTCACGCCCGTGATGTAAACCGAATCCTCTGCAGCTTCCGAATCAACAACACCCTCACCGTGATGAAGAGGCCTCTGCTAGTGGAGGACACGTACCTGCTCTGCCCAGCGCCTGTACTGGAGGAGGAGGGAACGTCTGCCTCCCTCCATGTCAGTATGAACAACGGCCTGAGTTTTATCTCCAGCTCTGTGACCATCTCGACCGTCCGCTGTACGGACGGGACGTTTTTGGCCATCGCTCTGCTGATCCTGCTGCTGCTGATCGCTGTGGCGGCTCTCTGGTGGTTTTGGCCGCTCTGTTGCACTGTGATCGTTCGTGAGCCGCCGCCGCCACCCGTGATGGATGACGATTCGGACGAAGAGGACGAAGGCTACCCGAAGAAGAAGTGGCCGACGGTGGACGCCTCGTATTACGGTGGGAGAGGAGTCGGTGGCATCAAAAGGATGGAGGTGCGCTGGGGAGATAAGGGATCCACTGATGAAGGAGCCAAACTGGAGAAGGCTAAGAATGCTCGGGTGAAGATGCCAGAGGAAGAGTTTGAGTTTCCCACCACACGAACCCTAAACAACGGCATGAGGAAACCCATCTCCCCGCAGAAGTGGTACTCTCCAATCAAGGGAAAGCTTGACGCTCTGTGGGTTTGGCTCAGGAGAGGATATGATCGTGTGTCTGTGATGAGACCTCAGCCTGGAGAGAAGGGTCGCTGTATGAAATTGACCCGTGTGAAATCCTGCCCGCCTCCTCGATACCCGCACTACAACAACCCGTCCAGCCCCATCTACAGCCTGCCCCACAGCAGATGCCCTCCTGTACCACAGGGTACACTCCCGCCCACTCCACGCTGCTCCGCCTACTCTCCAAACTCGATCCTGCCTCCTCTTCCATTGACTCCACCCCCAGACTCCATAACCCCGCCTCCTTACACTCCTCCTCCAACCAGAGCTCTTCCACCTGCCTGTCTGAGCATCAGTGTGACTCTGCCTCCACCCTCATCGCCTTTGTCTCAGCCCCCTGATGAGGGTCCACACGCAAGAGCTCCGCCCCCTTCCCGCCCACCGCCACGGCCAGGTCCCGATGAACCACACTACTACCAGGACTGA
>TCONS_00004531
CTCTCTTTATTCCAGATGAACCCCAGTTTTCATGCAAGACCCAAACACCACCAGACCGAGTCCAATGATTTGCTGAAGTTTTCAAACTAacccaagtgcacacacacacacacacacacatgtgaggGCCTGAAACACATCTGCAGCAGTATATTAGAGTTATCTGACTGAGGACTGGAGCTCCAGACTCCAGCCTGGATGGATCAGTGGCTCCAGAGGACATCGTCTCTATTAAAGCTGAGGCTGTTTTTGCATTGACTTGTGCAAGGGTTGCAATTACCAAACTGGAATAATGTCCTTGGAGTGGAGCGGAGGCTTGTTTGTGATGCTCATCCTGAGGCTCAGCTGTTGTGCTGGACAGAGCTATGAACGCTGGGAAGCCGGATCCTCGTGCTACGGAGGCTTTGACCTCTACTTTGTGCTGGACAAGTCTGGAAGTGTGCAGCACCACTGGAATGAGATCTACTACTTCGTCGATCACCTCGCACACAAGTTCATCAGTCCACAGCTCCGCATGTCCTTCATCGTCTTTTCAACGGAGGGACGAATTCTGATGGAACTGACAGAAGACAGggatCAGATTCGTGCTGGGCTGGAGGAACTTCAGCGAGTCCTACCAGGTGGAGACACCTTTATGCACAAAGGTTTTCAGAAGGCAAGTCAGCAGATTTACTATGGAACAGGTGATGGATACCGCACGGCGAGCGTCATCATTGCTCTGACAGATGGAGAACTTCGCGAGAATGAATTTGACTTGGCAGCCAGAGAGGCCGGCCGCTCGCGTCAGCTCGGAGCTTCTGTCTACTGTGTCGGAGTGAAGGACTTTAATGAAACCCAGCTGGCAACAATAGCTGATAGCAAAGATCACGTCTTCCCGGTAAATGATGGCTTTGAAGCGCTGCAAGGGGTCATTGATTCAATTCTGAAGAGATCCTGCATAGAGATCCTCGCCGTGGAGCCTTCCAGTATTTGTGCCGGAGAATCCTTTGAGGTGGTGGTTCGTGGAAACGGATTTCTTCACGCCCGTGATGTAAACCGAATCCTCTGCAGCTTCCGAATCAACAACACCCTCACCGTGATGAAGAGGCCTCTGCTAGTGGAGGACACGTACCTGCTCTGCCCAGCGCCTGTACTGGAGGAGGAGGGAACGTCTGCCTCCCTCCATGTCAGTATGAACAACGGCCTGAGTTTTATCTCCAGCTCTGTGACCATCTCGACCGTCCGCTGTGTGAGTACAGAAATCCCGCCGGACAGCAGTGTCAGACCCACAACCACAGTTACACTGGGCAGAGCCACTGCCTCCTCTAGCTCAGCTCCATCTTCAGTCTGCCCTCTGAACACAACGGACGGGACGTTTTTGGCCATCGCTCTGCTGATCCTGCTGCTGCTGATCGCTGTGGCGGCTCTCTGGTGGTTTTGGCCGCTCTGTTGCACTGTGATCGTTCGTGAGCCGCCGCCGCCACCCGTGATGGATGACGATTCGGACGAAGAGGACGAAGGCTACCCGAAGAAGAAGTGGCCGACGGTGGACGCCTCGTATTACGGTGGGAGAGGAGTCGGTGGCATCAAAAGGATGGAGGTGCGCTGGGGAGATAAGGGATCCACTGATGAAGGAGCCAAACTGGAGAAGGCTAAGAATGCTCGGGTGAAGATGCCAGAGGAAGAGTTTGAGTTTCCCACCACACGAACCCTAAACAACGGCATGAGGAAACCCATCTCCCCGCAGAAGTGGTACTCTCCAATCAAGGGAAAGCTTGACGCTCTGTGGGTTTGGCTCAGGAGAGGATATGATCGTGTGTCTGTGATGAGACCTCAGCCTGGAGAGAAGGGTCGCTGTATGAAATTGACCCGTGTGAAATCCTGCCCGCCTCCTCGATACCCGCACTACAACAACCCGTCCAGCCCCATCTACAGCCTGCCCCACAGCAGATGCCCTCCTGTACCACAGGGTACACTCCCGCCCACTCCACGCTGCTCCGCCTACTCTCCAAACTCGATCCTGCCTCCTCTTCCATTGACTCCACCCCCAGACTCCATAACCCCGCCTCCTTACACTCCTCCTCCAACCAGAGCTCTTCCACCTGCCTGTCTGAGCATCAGTGTGACTCTGCCTCCACCCTCATCGCCTTTGTCTCAGCCCCCTGATGAGGGTCCACACGCAAGAGCTCCGCCCCCTTCCCGCCCACCGCCACGGCCAGGTCCCGATGAACCACACTACTACCAGGACTGAGTAGAGATTTGCACAATAAAAGCTGCTGCCGGCGAAATCTAAAGCGACATTGTCCAGCCATTAGAAAGTTGCAATTGTTACTGTTGATAATGGCTGCCGATGGGATTGTGACTGTGTTATTGCAcatttgattctgattggtcgagAAACATTTTAAGGTGTTTATTTCCTTAAATCGCATGTCTAAGACGTTTCTTTTGTAGGTTTGTTGACTTTAATATCACCTTGCCTTTCTCTTTAAAGCGTTTGGAGGTTTTAGATTAGCTCCGTCCACACTATAATAATAACGTGAAGGAAAATTTTGTTTGAGATtgaaatacactacctgacaaaagtcttgtcgttgattccagatgtaagagcaacaaataataacttg

Function

symbol description
antxr1b Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).

GO:

id name namespace
GO:1901998 toxin transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-21 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDARG00000074075

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004530 False 2244 mRNA 0.53 18 40973524 41046396
TCONS_00004531 True 2609 mRNA 0.52 18 40973652 41046775

Neighbor

gene id symbol gene type direction distance location
XLOC_002406 CU571179.1 coding upstream 8712 40939664 ~ 40964812 (+)
XLOC_002405 trim69 coding upstream 121847 40836378 ~ 40851677 (+)
XLOC_002404 si:ch211-139n6.3 coding upstream 173667 40792078 ~ 40799857 (+)
XLOC_002403 taar19c coding upstream 191411 40781052 ~ 40782113 (+)
XLOC_002402 taar19b coding upstream 198281 40774215 ~ 40775243 (+)
XLOC_002408 anxa4 coding downstream 112466 41159241 ~ 41192881 (+)
XLOC_002409 adrb3b coding downstream 152885 41199660 ~ 41214668 (+)
XLOC_002410 prlhr2b coding downstream 205750 41252525 ~ 41260567 (+)
XLOC_002411 CABZ01049847.1 coding downstream 503044 41549819 ~ 41609165 (+)
XLOC_002412 lrrc75bb coding downstream 621708 41668483 ~ 41735503 (+)
XLOC_002398 BX001050.2 non-coding upstream 224626 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 333720 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 363571 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 364807 40607701 ~ 40608717 (+)
XLOC_002414 BX005006.1 non-coding downstream 793144 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 936222 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1423841 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 1674066 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 1683171 42729946 ~ 42731994 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00239233_00272508 NA coding CI01000158 null 239233 ~ 272555 (+)