XLOC_002405 (trim69)


Basic Information

Item Value
gene id XLOC_002405
gene name trim69
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40836378 ~ 40851677 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004528
CGTCATGCGTGAAACTCCTGCCAACTTTCAGCAGGATCAAAATCCAGAGACGCCCCCTATTCTTTCTCCAAGTCAACAGGAAAGTCAGTCGAGAAGAGCGAGACGGACAGAACAAAGCATGTCCAGCAGTCTCCCAGCACAGAACAAGATGGACAAGCAAAAGCTGAGGCCTGAGATTCCTCCTCGGGTGTCCAAAAGTTCAGCTCAGCGCCTCAGCAGAGATCTGACCTGCTCTATATGTCTGGATCTCTTCAAGCAGCCGGTCTCCCTGCCCTGCGACCACACGTTCTGTGAAGCCTGCATCACCAGCTACTGGAGCGGCCCTCGTGTTAAATGCCAGGCTGGATCTGGGTCTTGTCCACAGTGCAGGAAGGTGTTTCACGGTAAGAGCTACAGGCCGAACCGCATCGTGGCCAACATCGTGGAGAGCTACTGCCAGGGCATGGAGGAGAGCGGGGTCCGGCTGGGGGCTGTGTCGGAGCCGGCTCCTACTGCGCCACTCTGCATGCGCCACAGAGAAGAGCTGAAGCTGTACTGCGAGGAGGACCAGGAGCTGGTGTGTCTGGTCTGCGGGATCTCCCAGGACCACCGCGCTCATACACTGGTCTGCGTGCAGGATGCGCAAAAGAGGTACCGGGCGTCTCTGACTACATCTGCAAACGCCCTTCAGAAAGAGCTCAACACGGCTCTGGAGTGCGAGAGAGAGACTGAAGAGGAGGTCAAGAAACTCAAGGATCACACAGCAGACCTGAAGCAGAGGATCGAGGCTCAGTTCAGCGAGCTCCACCAGTTCCTCTACCAGGAGGAGAAGCTGCTGCAGGTGAAGCTGAAGACGGAGGAGCGCAGAGAGCTGATCCGGCTGGACGAACACAAGGCTCTGCTCAGTGTAGAGATCTCACGCCTGCGCAGAGCTGTGAACGACATCGAGGACAAGCTGAGCGAGCAGGATCCATACACACTGCTCAGGAGCATTAAGGGTCTGCTTCAGAGGCAGCCACCCAAGTTCGAGAGGCCGACGCTGACGCCGCCCAGCCTGTGCGAGGGCCGATTCGCCGGGCCCCTGCAGTACAGAGTCTGGAAGTCACTCAAGGGCAGCATCTATCCAGTTCCCTCTGCCATCACGTTTAACTCCAAAACTGCGAATCCTTGGCTGAGCCTGACCTCTTCCCTGACCTGTGTGAGATACCAGACCTTCAACAGCAGCGTGCAGGACAATCCTCAACGCTTCAACGCGGCGCTGTCCCTCATGGGCGGCCAGGGCTTCACTAAAGGCCGGCATTACTGGGAGGTGGAGGTTTACAGCAGCACTGTCTGGACCGTCGGCGTCGCTCGTGAATCCGTCACCAGGAAAGGTGTCATCAACACCATGCCTGCAAACGGCTTCTGGACGCTCTCTCTGTCGTATGGAGTTCAGTATATGGCTGGGACGTCTCCACCAACGCTGCTGTCCCTGGAGGAGCCGCTGGCCAGGATTGGGGTCTATCTGGACTATAAGAGGGGCCTGGTGTCGTTTTATAACGCAGAGAGCATGACGCACCTCTATACCTTCAGGGACACCTTCACCGAGACCCTCTTTCCATACTTTAACCTGGGCTTCCTGGATAAAGTGCACGAAAATGAGCCTCTTAAAGTGTTCATGCCCAAAATCTGA

Function

symbol description
trim69 Predicted to enable zinc ion binding activity. Acts upstream of or within brain development and regulation of apoptotic process. Is expressed in central nervous system; fin bud; head; heart; and pleuroperitoneal region. Orthologous to human TRIM69 (tripartite motif containing 69).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007420 brain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-857 Predicted to enable zinc ion binding activity. Acts upstream of or within brain development and regulation of apoptotic process. Is expressed in central nervous system; fin bud; head; heart; and pleuroperitoneal region. Orthologous to human TRIM69 (tripartite motif containing 69).

Ensembl:

ensembl_id ENSDARG00000060688

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004528 True 1651 mRNA 0.57 6 40836378 40851677

Neighbor

gene id symbol gene type direction distance location
XLOC_002404 si:ch211-139n6.3 coding upstream 36521 40792078 ~ 40799857 (+)
XLOC_002403 taar19c coding upstream 54265 40781052 ~ 40782113 (+)
XLOC_002402 taar19b coding upstream 61135 40774215 ~ 40775243 (+)
XLOC_002401 taar19d coding upstream 67114 40768203 ~ 40769264 (+)
XLOC_002400 taar19g coding upstream 73144 40762200 ~ 40763234 (+)
XLOC_002406 CU571179.1 coding downstream 87987 40939664 ~ 40964812 (+)
XLOC_002407 antxr1b coding downstream 121847 40973524 ~ 41046775 (+)
XLOC_002408 anxa4 coding downstream 307564 41159241 ~ 41192881 (+)
XLOC_002409 adrb3b coding downstream 347983 41199660 ~ 41214668 (+)
XLOC_002410 prlhr2b coding downstream 400848 41252525 ~ 41260567 (+)
XLOC_002398 BX001050.2 non-coding upstream 87480 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 196574 40638776 ~ 40639804 (+)
XLOC_002376 CR396590.3 non-coding upstream 226425 40609461 ~ 40609953 (+)
XLOC_002375 CR396590.7 non-coding upstream 227661 40607701 ~ 40608717 (+)
XLOC_002373 CR396590.8 non-coding upstream 235876 40599935 ~ 40600502 (+)
XLOC_002414 BX005006.1 non-coding downstream 988242 41839919 ~ 41840033 (+)
XLOC_002417 NA non-coding downstream 1131320 41982997 ~ 41986283 (+)
XLOC_002424 NA non-coding downstream 1618939 42470616 ~ 42477259 (+)
XLOC_002429 NA non-coding downstream 1869164 42720841 ~ 42723221 (+)

Expression


Co-expression Network