RNA id: TCONS_00004528


Basic Information

Item Value
RNA id TCONS_00004528
length 1651
RNA type mRNA
GC content 0.57
exon number 6
gene id XLOC_002405
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40836378 ~ 40851677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCATGCGTGAAACTCCTGCCAACTTTCAGCAGGATCAAAATCCAGAGACGCCCCCTATTCTTTCTCCAAGTCAACAGGAAAGTCAGTCGAGAAGAGCGAGACGGACAGAACAAAGCATGTCCAGCAGTCTCCCAGCACAGAACAAGATGGACAAGCAAAAGCTGAGGCCTGAGATTCCTCCTCGGGTGTCCAAAAGTTCAGCTCAGCGCCTCAGCAGAGATCTGACCTGCTCTATATGTCTGGATCTCTTCAAGCAGCCGGTCTCCCTGCCCTGCGACCACACGTTCTGTGAAGCCTGCATCACCAGCTACTGGAGCGGCCCTCGTGTTAAATGCCAGGCTGGATCTGGGTCTTGTCCACAGTGCAGGAAGGTGTTTCACGGTAAGAGCTACAGGCCGAACCGCATCGTGGCCAACATCGTGGAGAGCTACTGCCAGGGCATGGAGGAGAGCGGGGTCCGGCTGGGGGCTGTGTCGGAGCCGGCTCCTACTGCGCCACTCTGCATGCGCCACAGAGAAGAGCTGAAGCTGTACTGCGAGGAGGACCAGGAGCTGGTGTGTCTGGTCTGCGGGATCTCCCAGGACCACCGCGCTCATACACTGGTCTGCGTGCAGGATGCGCAAAAGAGGTACCGGGCGTCTCTGACTACATCTGCAAACGCCCTTCAGAAAGAGCTCAACACGGCTCTGGAGTGCGAGAGAGAGACTGAAGAGGAGGTCAAGAAACTCAAGGATCACACAGCAGACCTGAAGCAGAGGATCGAGGCTCAGTTCAGCGAGCTCCACCAGTTCCTCTACCAGGAGGAGAAGCTGCTGCAGGTGAAGCTGAAGACGGAGGAGCGCAGAGAGCTGATCCGGCTGGACGAACACAAGGCTCTGCTCAGTGTAGAGATCTCACGCCTGCGCAGAGCTGTGAACGACATCGAGGACAAGCTGAGCGAGCAGGATCCATACACACTGCTCAGGAGCATTAAGGGTCTGCTTCAGAGGCAGCCACCCAAGTTCGAGAGGCCGACGCTGACGCCGCCCAGCCTGTGCGAGGGCCGATTCGCCGGGCCCCTGCAGTACAGAGTCTGGAAGTCACTCAAGGGCAGCATCTATCCAGTTCCCTCTGCCATCACGTTTAACTCCAAAACTGCGAATCCTTGGCTGAGCCTGACCTCTTCCCTGACCTGTGTGAGATACCAGACCTTCAACAGCAGCGTGCAGGACAATCCTCAACGCTTCAACGCGGCGCTGTCCCTCATGGGCGGCCAGGGCTTCACTAAAGGCCGGCATTACTGGGAGGTGGAGGTTTACAGCAGCACTGTCTGGACCGTCGGCGTCGCTCGTGAATCCGTCACCAGGAAAGGTGTCATCAACACCATGCCTGCAAACGGCTTCTGGACGCTCTCTCTGTCGTATGGAGTTCAGTATATGGCTGGGACGTCTCCACCAACGCTGCTGTCCCTGGAGGAGCCGCTGGCCAGGATTGGGGTCTATCTGGACTATAAGAGGGGCCTGGTGTCGTTTTATAACGCAGAGAGCATGACGCACCTCTATACCTTCAGGGACACCTTCACCGAGACCCTCTTTCCATACTTTAACCTGGGCTTCCTGGATAAAGTGCACGAAAATGAGCCTCTTAAAGTGTTCATGCCCAAAATCTGA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0007420 brain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-857 Predicted to enable zinc ion binding activity. Acts upstream of or within brain development and regulation of apoptotic process. Is expressed in central nervous system; fin bud; head; heart; and pleuroperitoneal region. Orthologous to human TRIM69 (tripartite motif containing 69).

Ensembl:

ensembl_id ENSDART00000085792

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005733 lncRNA upstream 205884 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 299852 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005937 lncRNA upstream 555376 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005935 lncRNA upstream 637546 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004529 lncRNA downstream 87987 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00004545 lncRNA downstream 1099523 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00005938 lncRNA downstream 1131320 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004551 lncRNA downstream 1506934 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 1510828 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00004527 mRNA upstream 36521 40792078 ~ 40799857 (+) True XLOC_002404
TCONS_00004526 mRNA upstream 54265 40781052 ~ 40782113 (+) True XLOC_002403
TCONS_00004525 mRNA upstream 61135 40774215 ~ 40775243 (+) True XLOC_002402
TCONS_00004524 mRNA upstream 67114 40768203 ~ 40769264 (+) True XLOC_002401
TCONS_00004523 mRNA upstream 73144 40762200 ~ 40763234 (+) True XLOC_002400
TCONS_00004530 mRNA downstream 121847 40973524 ~ 41046396 (+) False XLOC_002407
TCONS_00004531 mRNA downstream 121975 40973652 ~ 41046775 (+) True XLOC_002407
TCONS_00004532 mRNA downstream 307564 41159241 ~ 41192881 (+) False XLOC_002408
TCONS_00004533 mRNA downstream 318319 41169996 ~ 41192879 (+) True XLOC_002408
TCONS_00004534 mRNA downstream 347983 41199660 ~ 41214668 (+) True XLOC_002409
TCONS_00004521 other upstream 87480 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 196574 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 226425 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 227661 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004493 other upstream 235876 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004540 other downstream 988242 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004569 other downstream 2185456 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 3848140 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 4056091 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 4324743 45176420 ~ 45176924 (+) True XLOC_002466

Expression Profile

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