XLOC_002421 (dbnla)


Basic Information

Item Value
gene id XLOC_002421
gene name dbnla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42358426 ~ 42372811 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004550
AGATTTCAAGAGACAGGTGCGTTTTTAACACGACAAAGGACGCTCAAACGAAAGAGGAAGACTGGTTATGATTATATCTCCATTAAAAATATCCACAACTTCATTCATTTCATGATCCACAATGGCGGTAAACCTGAGTAAAAACGGACCCGCGCTTACAGAAGCATATGATGAGGTGGTGAGCGGGAAAAAAGACTGggtgTTGTTCACCTATGAAGGAAACAGTAATGACATTCGGGTTGCAGGGAAGGGAGATGGTGGGCTTGAAGAAATGGTGGACGAACTGAACAGTGGTAAAGTCATGTATGCCTTCTGTAGAGTGCTGGACCCCAGCTCTGGAGTGCCCAAATTTGTGCTCATCAACTGGACCGGCGAGGGAGTCAAGGACCTCAGAAAGGGTGTTTGCGCTAGACATGTTCACTCAATGGCCAATTTTCTGAGAGGTGCACACGTGACCATTAACGCTCGATCAGATGATGACGTGGAACCTGCGGCCATCATGGAGAAAGTGGCCAAAGGCTCCGGCGTAAACTACAACATCCACAGAGAATCAAGCCAGAACAATCATTCTGAGCCTCCTGGACGTGTGGGCTCTGTTTATAAAAAGGTCAGTGCTTTAGATGAGATCCAAGGTACGAGCAGAGATAACTTCTGGGCTCAGGCTGAGCGAGATGAAAAGAACCGCCGGCAGGAGGAGCGCAGGAAGGCAGATGAGGAGAGGCAGCGTTTGGAGAAAGAACGGAGAGATCAAGAGAGCAGAGAAGCAGAAGAACGAGAGCGAAGGAGGaaggagagagagaaggagattGACCAACAGAGGATTTTTGAAAAGAAACTAGAGGCGGAGAATAAAGAAGAGGAACAAAGAAAATTGGAGAAAGAGCAACAGCAGACTCCTGTTAAAGCAGGAATATTGAGATCTGCGTCTGTGCAGAAGGCCAATGAGGCGGCATCGATTATCTCCCAGCGATCCACCAATCCCAGAGAGCTGTTTATGAAGAAAGAGAGAAGCTTGGTCAATGATGCAACATCTTCTCCATCAAGCAGCCGACAGGGTCAGCTAAGAAGCCCATTTTTATCCCAGCAAGCAGTAAGCACTCCCAGTGAGAGCAGATCTCAGCCTTTATCTCCTCTTCAGCCTGTGGCTTCAGTTTCACATGTTCCAGCTAAAGTCTCTCCTGTGCGCGAAACTCAGACTTTCCCAGTTAAAACCGCAGATCCCTTCTCTGATGATCCGTTTGTGTCTGAACAAGCTGAGGACTATGATGATGAATGGGATGATTCAGATGCAGAGGTGTCGAGTCCTGCTGCAACACACAAGCAAAATGCAGATGGAAACAGCACCTACATGAACATCCCATCAAATCAAAGTCTGTATGAGAACGTTCACCAGGATTTCCAATCTCCGGCGGATGAAGAGGAGAATGGCGACAACCAGAACATCTGCGCAAGAGCACTATATGACTATCAGGCTTCGGATGACACAGAGATCAGCTTTGACCCGGATGATGTTATCTCAGGGATCGACATGATAGATGAGGGCTGGTGGAGGGGTTACGGTCCGGACGGCCACTATGGGATGTTTCCTGCTAATTATGTCGAGCTTATGTAGATTTTGAGTAACCAATCAGGTGCGGTTTTAATATGTGTTTGCCTTGTGTGCTTTAATTGTGTTTGTGGGCATTTGGAGAAACTGGTTTCTTGTATTATACATATAATGTACAATAAAAGTTTGGAATAAAA
>TCONS_00004551
GGAAAAAAGACTGggtgTTGTTCACCTATGAAGGAAACAGTAATGACATTCGGGTTGCAGGGAAGGGAGATGGTGGGCTTGAAGAAATGGTGGACGAACTGAACAGTGGTAAAGTCATGTATGCCTTCTGTAGAGTGCTGGACCCCAGCTCTGGAGTGCCCAAATTTGTGCTCATCAACTGGACCGGCGAGGGAGTCAAGGACCTCAGAAAGGGTGTTTGCGCTAGACATGTTCACTCAATGGCCAATTTTCTGAGAGGTGCACACGTGACCATTAACGCTCGATCAGATGATGACGTGGAACCTGCGGCCATCATGGAGAAAGTGGCCAAAGGCTCCGGCGTAAACTACAACATCCACAGAGAATCAAGCCAGAACAATCATTCTGAGCCTCCTGGACGTGTGGTGAGGGATTTCAATCATAATCATAACTCATATTAAAGATTATGGAAGTCTAGTCCTACTAtggaaattgtgaaaaaaattaaaaggtaataggtggttcattccgctgtggtgacccctgataaattagggact
>TCONS_00004552
cacgtccaacctttaggcagatgggctacagcagcagaagaccacaccgggtgccgctcctgtcagctaagaacaggaaactgaggctacaattcacacaggctcaccaaaattctCAGttcaacagagcacctttgggatgtggtggaacaggagatcaTGAAAGTGCAACTgactgcagcaactgtgtgatgctatcatgtcaatatggagcaaaatctctgaggaatatttccagtacctagttgaatctttgccacaagggattaaggcagttctgaaagcaaaagggggtccaacctggtactggtaaggtgtacctaataaaggggccggtgagtgtataaacgtgaaattacaagaaaaaattttgtggaataaaaaacaaatcaacatttttttattccaTGGCAAAAAAAACAAGCTTCACTATATGGAGGGTCTTTAAATATCTGCATGTTGTCCTTTTCAATTCCTTTATTATCGTTGCTCCCACAGGGCTCTGTTTATAAAAAGGTCAGTGCTTTAGATGAGATCCAAGGTACGAGCAGAGATAACTTCTGGGCTCAGGCTGAGCGAGATGAAAAGAACCGCCGGCAGGAGGAGCGCAGGAAGGCAGATGAGGAGAGGCAGCGTTTGGAGAAAGAACGGAGAGATCAAGAGAGCAGAGAAGCAGAAGAACGAGAGCGAAGGAGGaaggagagagagaaggagattGACCAAC

Function

symbol description
dbnla Predicted to enable actin filament binding activity. Predicted to be involved in generation of neurons; postsynaptic actin cytoskeleton organization; and regulation of actin filament polymerization. Predicted to act upstream of or within receptor-mediated endocytosis; ruffle assembly; and synapse assembly. Predicted to be located in several cellular components, including cytoplasmic vesicle; perikaryon; and ruffle. Predicted to be active in several cellular components, including lamellipodium; postsynaptic density; and postsynaptic membrane. Predicted to colocalize with actin filament. Is expressed in corneal epithelium. Orthologous to human DBNL (drebrin like).

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0045773 positive regulation of axon extension biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0097178 ruffle assembly biological_process
GO:0061003 positive regulation of dendritic spine morphogenesis biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0098974 postsynaptic actin cytoskeleton organization biological_process
GO:0007416 synapse assembly biological_process
GO:0030425 dendrite cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0030027 lamellipodium cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-42 Predicted to enable actin filament binding activity. Predicted to be involved in generation of neurons; postsynaptic actin cytoskeleton organization; and regulation of actin filament polymerization. Predicted to act upstream of or within receptor-mediated endocytosis; ruffle assembly; and synapse assembly. Predicted to be located in several cellular components, including cytoplasmic vesicle; perikaryon; and ruffle. Predicted to be active in several cellular components, including lamellipodium; postsynaptic density; and postsynaptic membrane. Predicted to colocalize with actin filament. Is expressed in corneal epithelium. Orthologous to human DBNL (drebrin like).

Ensembl:

ensembl_id ENSDARG00000008170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004550 False 1743 mRNA 0.47 15 42358426 42372811
TCONS_00004551 False 539 lncRNA 0.46 5 42358611 42361347
TCONS_00004552 True 724 lncRNA 0.45 2 42362505 42363321

Neighbor

gene id symbol gene type direction distance location
XLOC_002420 CU467905.1 coding upstream 178602 42169982 ~ 42179824 (+)
XLOC_002419 CR925773.1 coding upstream 195620 42159471 ~ 42162806 (+)
XLOC_002418 setd1ba coding upstream 335860 41986685 ~ 42022566 (+)
XLOC_002417 NA coding upstream 372143 41982997 ~ 41986283 (+)
XLOC_002416 tmem120b coding upstream 398492 41939963 ~ 41959934 (+)
XLOC_002422 COX5B coding downstream 1959 42374770 ~ 42378524 (+)
XLOC_002423 npy8ar coding downstream 50507 42423318 ~ 42463859 (+)
XLOC_002424 NA coding downstream 97805 42470616 ~ 42477259 (+)
XLOC_002425 actr1 coding downstream 149132 42521943 ~ 42540839 (+)
XLOC_002426 kctd9b coding downstream 169706 42542517 ~ 42555822 (+)
XLOC_002414 BX005006.1 non-coding upstream 518393 41839919 ~ 41840033 (+)
XLOC_002406 CU571179.1 non-coding upstream 1393614 40939664 ~ 40964812 (+)
XLOC_002398 BX001050.2 non-coding upstream 1609528 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 1718622 40638776 ~ 40639804 (+)
XLOC_002429 NA non-coding downstream 348030 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 357135 42729946 ~ 42731994 (+)
XLOC_002432 NA non-coding downstream 368274 42741085 ~ 42745580 (+)
XLOC_002433 NA non-coding downstream 446915 42819726 ~ 42820906 (+)

Expression


Co-expression Network