XLOC_002420 (CU467905.1)


Basic Information

Item Value
gene id XLOC_002420
gene name CU467905.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42169982 ~ 42179824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004549
ATGTCTTTCTGTAGATTTCCAGCCTTCACAGCAAACAAGAGAATGAAGAACCGGGCGCTGATTGTGTCAGTGGAGAATTTCTATCCTGACGCACTTCTCAGAAACAGACCCGGAGCCAAGAAAGACACGCAAAGACTTCACAAGATCCTGATGAAACTGGGCTTCTCTGTGGACATCAGAGTGGACATGGAAGCAGGAGAGATTATTGAGGCTTTCAAACAAGAGAGCGAGCAGACGGTCAAAGAGTGCTTTGTGGGCATCATCTCCAGTCACGGTGAAGAAGGTGTTGTGTTTGGTTGTGATGGACGTGCTGTGAATCTGGCCGAGATCTACAGCTGCTTCAGAAGCCCAATAATGAAGGACAAGAGCAAACTCTTCCTCATCCAGGCTTGCAGAGGTGGAGATTTGGATGGAGGCGTGCAGGTGGAGACAGACTCTTCATCCTCAGAGGAACAGGACATCCTGTCTGAGCTTCTTTCCATTCCTATCGACACTGCAGTAACATACGCCACTTCACCAGgCTACGCTGCATTCATGCATCCTCTGGGCTCGGTGCTGATTCAGACTCTCTGTGATCTGCTAGAAAGCGATGGAGGTCCAGATCTAGAGATCACCAAACTCCTGACTCGACTGAACCACCAGGTGGCCTACAACTTCCAGGCCAGAGGGAAAATACTGGGCGGGAAAAAGCAGATGCCGTGCTTTGTGACGCGCTTCACTAGAGAAGTTTTCCCATTCAGGAAAGCTGCGGCAGAAGATGTGGGCTTGACTTTCGCAGCCACGCAACTCATCGATGAACCCAGGAGATCACGGAAAACCTCTATCAGCTGAAGATCACAGAAATGAGGATAAAACTGATGGAGGAACATAGATAAACTTTTGTTTACAATCTCAATGTGCATCTCAGGACACTGACGTCATCATCATGTAGAGTTCAATCTCCAGCAGGAAGTGAGAGCGACTGGGAATTTTGCAGAATGAGATCTTTGATTGCTTACTGCTCCATTTGCTTGACAGCTGTTCATACTACctactttttattctttttcaaaacatttcccGAAGTGCAGTTTAACAGAGAGAGAATTTTATTGACTAATTTCTATTAACATTTgccttttatctttgccatgatgacagtacatgatgTTTTTCTACTTATagtgcaagatactagtatttatcttaaagtgacatttaattctGTTAAATAGGCaaatcattggacaacagtggtttgttctgtagccaatcaaaaaatgaacactaccggtcaaaagtttggggtcagtaggatttttaaatcttttaaaataagcttctcctgctcacaaaggctgcattcattaaataaaaacacagtacACATTATAAATCTATtgggaaatgttattgcactataaaacaactgtttaaaagtagtttataatttaatgtataatttattccagttattttaaagattaatttccagcttcattactccagttttcatatagtcacatgacccttcagaaatcactctaatattaattattattgttattattattatttatgatagtaataaaagcaatactgatttcatctaaaactacatacaataagaaagcagttattttaaatttgaataaatatttaaaaatttgtaaatttaataaatggcGCCTTGATGaacaataattttctttaaaaaaaatttagaaaaaaaaaactgaccccaaacttttgaggggaagtgtatatattaaaaaggctaataatattaaccctagcagttaaaaatctttttaaaattgtatattattattccagtcaaactgaaaaaaaaacaaggctttctacagaagaaaaatataataaataaaaacttccttgctctattaaacatcactctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112575

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004549 True 1901 mRNA 0.38 4 42169982 42179824

Neighbor

gene id symbol gene type direction distance location
XLOC_002419 CR925773.1 coding upstream 7176 42159471 ~ 42162806 (+)
XLOC_002418 setd1ba coding upstream 147416 41986685 ~ 42022566 (+)
XLOC_002417 NA coding upstream 183699 41982997 ~ 41986283 (+)
XLOC_002416 tmem120b coding upstream 210048 41939963 ~ 41959934 (+)
XLOC_002415 orai1b coding upstream 248565 41914084 ~ 41921417 (+)
XLOC_002421 dbnla coding downstream 178602 42358426 ~ 42372811 (+)
XLOC_002422 COX5B coding downstream 194946 42374770 ~ 42378524 (+)
XLOC_002423 npy8ar coding downstream 243494 42423318 ~ 42463859 (+)
XLOC_002424 NA coding downstream 290792 42470616 ~ 42477259 (+)
XLOC_002425 actr1 coding downstream 342119 42521943 ~ 42540839 (+)
XLOC_002414 BX005006.1 non-coding upstream 329949 41839919 ~ 41840033 (+)
XLOC_002406 CU571179.1 non-coding upstream 1205170 40939664 ~ 40964812 (+)
XLOC_002398 BX001050.2 non-coding upstream 1421084 40747873 ~ 40748898 (+)
XLOC_002380 CR396590.1 non-coding upstream 1530178 40638776 ~ 40639804 (+)
XLOC_002429 NA non-coding downstream 541017 42720841 ~ 42723221 (+)
XLOC_002430 NA non-coding downstream 550122 42729946 ~ 42731994 (+)
XLOC_002432 NA non-coding downstream 561261 42741085 ~ 42745580 (+)
XLOC_002433 NA non-coding downstream 639902 42819726 ~ 42820906 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00735610_00736996 NA coding CI01000158 null 735524 ~ 738137 (+)