RNA id: TCONS_00004549


Basic Information

Item Value
RNA id TCONS_00004549
length 1901
RNA type mRNA
GC content 0.38
exon number 4
gene id XLOC_002420
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42169982 ~ 42179824 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTTCTGTAGATTTCCAGCCTTCACAGCAAACAAGAGAATGAAGAACCGGGCGCTGATTGTGTCAGTGGAGAATTTCTATCCTGACGCACTTCTCAGAAACAGACCCGGAGCCAAGAAAGACACGCAAAGACTTCACAAGATCCTGATGAAACTGGGCTTCTCTGTGGACATCAGAGTGGACATGGAAGCAGGAGAGATTATTGAGGCTTTCAAACAAGAGAGCGAGCAGACGGTCAAAGAGTGCTTTGTGGGCATCATCTCCAGTCACGGTGAAGAAGGTGTTGTGTTTGGTTGTGATGGACGTGCTGTGAATCTGGCCGAGATCTACAGCTGCTTCAGAAGCCCAATAATGAAGGACAAGAGCAAACTCTTCCTCATCCAGGCTTGCAGAGGTGGAGATTTGGATGGAGGCGTGCAGGTGGAGACAGACTCTTCATCCTCAGAGGAACAGGACATCCTGTCTGAGCTTCTTTCCATTCCTATCGACACTGCAGTAACATACGCCACTTCACCAGgCTACGCTGCATTCATGCATCCTCTGGGCTCGGTGCTGATTCAGACTCTCTGTGATCTGCTAGAAAGCGATGGAGGTCCAGATCTAGAGATCACCAAACTCCTGACTCGACTGAACCACCAGGTGGCCTACAACTTCCAGGCCAGAGGGAAAATACTGGGCGGGAAAAAGCAGATGCCGTGCTTTGTGACGCGCTTCACTAGAGAAGTTTTCCCATTCAGGAAAGCTGCGGCAGAAGATGTGGGCTTGACTTTCGCAGCCACGCAACTCATCGATGAACCCAGGAGATCACGGAAAACCTCTATCAGCTGAAGATCACAGAAATGAGGATAAAACTGATGGAGGAACATAGATAAACTTTTGTTTACAATCTCAATGTGCATCTCAGGACACTGACGTCATCATCATGTAGAGTTCAATCTCCAGCAGGAAGTGAGAGCGACTGGGAATTTTGCAGAATGAGATCTTTGATTGCTTACTGCTCCATTTGCTTGACAGCTGTTCATACTACctactttttattctttttcaaaacatttcccGAAGTGCAGTTTAACAGAGAGAGAATTTTATTGACTAATTTCTATTAACATTTgccttttatctttgccatgatgacagtacatgatgTTTTTCTACTTATagtgcaagatactagtatttatcttaaagtgacatttaattctGTTAAATAGGCaaatcattggacaacagtggtttgttctgtagccaatcaaaaaatgaacactaccggtcaaaagtttggggtcagtaggatttttaaatcttttaaaataagcttctcctgctcacaaaggctgcattcattaaataaaaacacagtacACATTATAAATCTATtgggaaatgttattgcactataaaacaactgtttaaaagtagtttataatttaatgtataatttattccagttattttaaagattaatttccagcttcattactccagttttcatatagtcacatgacccttcagaaatcactctaatattaattattattgttattattattatttatgatagtaataaaagcaatactgatttcatctaaaactacatacaataagaaagcagttattttaaatttgaataaatatttaaaaatttgtaaatttaataaatggcGCCTTGATGaacaataattttctttaaaaaaaatttagaaaaaaaaaactgaccccaaacttttgaggggaagtgtatatattaaaaaggctaataatattaaccctagcagttaaaaatctttttaaaattgtatattattattccagtcaaactgaaaaaaaaacaaggctttctacagaagaaaaatataataaataaaaacttccttgctctattaaacatcactctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000190905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005938 lncRNA upstream 183699 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004545 lncRNA upstream 215797 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00004529 lncRNA upstream 1205170 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00005733 lncRNA upstream 1539488 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 1633456 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00004551 lncRNA downstream 178787 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 182681 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00005939 lncRNA downstream 290792 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005940 lncRNA downstream 294395 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00005941 lncRNA downstream 541017 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00004548 mRNA upstream 7176 42159471 ~ 42162806 (+) True XLOC_002419
TCONS_00004547 mRNA upstream 147416 41986709 ~ 42022566 (+) True XLOC_002418
TCONS_00004546 mRNA upstream 149642 41986685 ~ 42020340 (+) False XLOC_002418
TCONS_00004543 mRNA upstream 210048 41945890 ~ 41959934 (+) False XLOC_002416
TCONS_00004542 mRNA upstream 210188 41939963 ~ 41959794 (+) False XLOC_002416
TCONS_00004550 mRNA downstream 178602 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004553 mRNA downstream 194946 42374770 ~ 42378524 (+) False XLOC_002422
TCONS_00004554 mRNA downstream 195133 42374957 ~ 42378508 (+) True XLOC_002422
TCONS_00004555 mRNA downstream 243494 42423318 ~ 42462963 (+) False XLOC_002423
TCONS_00004556 mRNA downstream 282753 42462577 ~ 42463859 (+) True XLOC_002423
TCONS_00004540 other upstream 329949 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1421084 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1530178 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1560029 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1561265 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 857309 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2519993 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2727944 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 2996596 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 3058132 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00735610_00736996.mRNA True 2064 mRNA 0.39 4 CI01000158 735524 ~ 738137 (+)