RNA id: TCONS_00004546


Basic Information

Item Value
RNA id TCONS_00004546
length 5953
RNA type mRNA
GC content 0.52
exon number 19
gene id XLOC_002418
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41986685 ~ 42022566 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAACGCGGACCCAACCTTCGTGTTTCTGCTGGAAATGCAAGATATTCCACCTTTCTTTTCATTTCTCACATGTAACTCAATTTGTTTGATTTATCGACGCTCGTATAAAAATTCTGCGTTTTCTCAACGCTTCAGAATAATAATTTGAAAGCGCGTGTCGAATGTGCTGGAAGGTTGAGATAGTGGTGTATTGTAAGAGACAGAAACCCCAGACTAGAGGCACACAATATGTACCTGGAGAAAGAAATAAGCTAAATGAAGATCACGGTAGAAGACAGAGTTCAAGTTTGGCGAACGGAATGGACAACAGCCATCCTATCTGCAGTTCGGGAGAGAAACGAAGTCATCATTGGAGAAGTTACAAGTTGATTATTGACCCAGCGTTGAAAAAGGGTTCGCACAAAGTGTACCGCTACGATGGACATCAATTCAGCTCGCCGAGCCTTGGAATGTCACCCGTGGACATCGTCCGAGATCCGAGAATCGGTCGTCTGTGGACTAAGTACAAGGAGACTGATCTCCCGGTTCCTAAATTTAAGATCGACGAGTGTTACGTCGGCCGTGTTCCCCCGAAGGAGGTCACGTTCGCCAAACTCAATGACAACGTCAGAGAGGGATTCCTCACCGACATGTGCAAGAAGTTCGGCGACATCGAGGAGGTGGAAATATTGTACAATCCGAAGAACAAAAAACATCTCGGAATAGCTAAAGTTGTTTTCGAAACCGTCAAGGCGGCGAAAGATGCTGTCCAGAACTTGCACAACACGTCTGTCATGGGAAACATCATCCACGTGGAGCTGGACCCTAAAGGTGAAAATCGCCAGAGGTACTTCCAGCGTCTGATCAATGGAAGTTATACTCCGCTCACTCTTCCAGTCGGTGGCGAAGAGGCCTGTGATGTTTCTCCACGCAGCTTGGCTGAAGCCCTgatgGCTTGCGAGCCCTCCAGAAGACTGTTCGAAGGCGGTTCGTCTGTAGTCGCAGGCACAACACCGAGTGGCACCAACACACCCATGTCCCTGGATACAGCCTACTCCAGCCTAAGGCAGGATACGCCCCAGTCGCAAGGCACCCCGCACACCCCACGCCCATCAGGCACCCCGTTCTCTCAGGACTCCAGCTACTCCAGCAGGCAGGGCACGCCAGCGTTCCAAGCCAACCGTGCCGAATCATCAGGAGGCTACAAATCGAGGAGACATGAAACCAAATTCCAGGATGCCTACAACCGTAGACCAGAAAGGCGATATGTCCATGGACCCACGCAACGTGGTAACACAGAACAGCCGCCTAGTTTTAAGCAGCATCAACCACCTGAGCCGCCATCGCCTGCATTCACGCACACGCCGCCGCCACCTACCAGTgcaaattttaaaactgcttattcCCAATATCAACCCCCAATTCCCCAAGAGTACACAGTAGCCTCCTACCACCAGCCTGTTCAGCGGGAATTGGATTACAGAAGACCACCTCAAGCTCCGCCTCCCCCAAGCACTGACTTCCTGCCTGTCAGAGACAGACCCACAACTCCACCAATCCCTGAGCCTCCTCCTGCTCCAGAGACCCAACCAACGACACCTCCGTCTTCCACACCAGAGCCCTGTCCATCGCCTACCCAAGAGTCTGAGCGTAACAGCCTAGACTCCCGTATAGAAATGCTCCTGAAGCCCTTCCTGAATGAACGCGGAGACTCGGATGCTGAGGTGCGGATGGATGGGAGCCCGATCTCCTCCTCGTCATCCCAGCTGTCCCCAATCCCACCCCAGCGACCCTCGCGGCCTTCAAGCACTGGTCTGGAGGACATCAGCCCAACTCCGCTGCCTGATTCAGAAGATGATGAACCGATCCGTGGTACTGCTTCACTGTTGGCGAACTCAAGGGGTATGTCACCCACCAACATGCACAGTAAAAGCTGTGTGGGAGAACCACGGACGGCCATTGACAAAATGGACACGagTCATCAGTCTTCAGGTGAAGACATGGAGATATCTGACGATGAGATGCCTGGCACGCCGATCGCCAGCGGGGACTGTGACAAAAACATTGTGGTCAACTCAGCATTGTCTCTAATACAGACCATCCCCATGCCTCCACCAGGGTTTCCCCCGCTGCCCCATGCGGCTGGTTTCCCCCTACCGCCGCACCACCTTCCACACCATTCAACCGTTTCCCACTTGCCTAGCCATCACCCGATGCTCCACCCACTGCACTCTTATGGCATGATGCATTTTTTACCTGTAGATCTGCTTAGCTCTTTACCACAGTTGCTCCAGATGCCCTTTCAGATGCAGACTCAAATGCTGAGTCGCATGGCACAGAGCCAGCATCCGTACGCTTACCCGTACCCTGCTCCCAGTGCCAATCCTGCCGCCATGCCATTTGGGGGTCCGTATCCACCATTGTCAGTGGTTAGCGCTCCTGCAGACACGCTCCATGGGCAACCATGGCCACTACCCAGCATGCCCCAATTTAACCCCGCTGTTCCCCCACCTGGCTACGAGCCCCAGAAGGAAGACCCGCACAAAGCCACCATAGATGGAGTGCTGATGGCTATCGTCAAAGAGCTGAAGGCCATCATGAAGAAAGATCTCAACCGCAAGATGGTGGAAGTGGTGGCCTTCAGGAAGTTTGATGAGTGGTGGGACAAACAGGAGCTTTCGGCAAAGGCTACACTTACACCTGTGAAAACAGGTGAGGGCAAAGACGAGGAGAAAGAACGGGCCAAACCCAAAGAGACAATGTCCTCGCATTTACCCTGGAATAAGGGCGAGGGTCTGGGCTTTGAGGGAATGAGTCTCGGCATCGGCCTGCGTGGCATTCGATTACCGTCCTTTAAGGTTAAGAGGAAACAGCCCCCTGAACCGACATCCACCAGTGACAACAAAAGGGTCCGGCCATCCACACCTGTCGACGATGAGCTGGAGGATGAAGAGTCAGAAAGAATGGGTCGCACGGACGGATCCAGAGTGGATCCAGCTGGTTCTTCTTCTAAACGAAGACCAGCCAGGCCTCTGGAGCTGGACAGCGaaggtgaggaggaggaggaaacaTCTGGTAAAGAGGAGTCGTCACTTTCAGATCATGAAGAAGAGCCAGTGGACGATGCATCTGAAAGGTTGTCCTCTGGCAAGGATTTGGAGGAAGAGGATGAAAAGAAGAGCGAATCGCACTCCAGCGAGAGTGAATCGTCTGACTCATCAGATGATGAAGCTTCCAGCTCATCGTCCTCCAAATCTGGTTCTGATTCCTCAGGGAGCGAGAGCTCATCTGACTATGAATCAAGTtcagaggaggaagaggaagaggaggaagaagaagagcgAATAGTGGGAATGGATGATGAAGAGGATGTGGATGCACGAACCTCAACGTCTTCATCAACTACTTCTACTTCATCCTCTGATGAAGAGGAGGTTGTTGAGGTAAAAGCCCCCAGTACCCCCACAGGACCACCCCCAGAAGAGGAACCCAATGAGCTAGGCAGACTGGAGGCTGTAGATGAAGCAGAGATCGATCACAAACCTAGTATGGTGAGCTTAATCAAGACAAAAGTTGAGGAGGTGCGACCCCCTTCACCCAAAGGATTGCCAGCTGACGAACTAGACGTTGATCTGGAGGTGAAAATTCCAGTGCCCAAAACTGAAGCCAGTCTGGAGGAAGTTGGTAACTTGCGTCCACCAACCCCAACAGGTTCGTTTGCAGATAGTGATCAGGACACCCGACCAAAGATCCCCACAGAAGACTTCCCTAGAACCCCTGGTCATGAAGGCCCAGTTCCCCTAGAATCAGAGACCACAGTCCCTCGATCTCTTCCTACACCCTCCATGCACCTTCCACTTCCTCCAAGTCACGTTCCTGATCCACAATCCCTTCTTCCACCCCCTGAAACTTTGCCGGATATGCCTGTGCGTGGGCGCTTGCCTACAGAAGAGGACATCCCGCGAACACCCGGTAGAGACCTCATGGATAGAGCTCGAGGTTTGGGCAAGTTGCAGAGCACTGATACGGTTCCTGTCACACCAGGTAGTGACACTCCTCTAACAGGTAACAGCTTGAGTTCGCCACATATTCTCGGCAGCCCTTTCTCTTACCCCGCTCAATCCCCTGTGCTCAGTGCTGGCATTCCTCGGACTCCAGGTCGAGACCTTACTTTTGCTCCAGCTTTCCCTGACTCTGCTGGTTTATCTGCAGGCCTTCCTATTCACAGGAAGGCCTCGTCTGAGATCTTGGAGGAGAAGCCTCTCTTTAAAGAGCCTCTACTCAGTGCCTCTCCCCAGGCCAGCCTACCTAATAATGCTGCTTCTTCCCCATTCCCTGGTCCTCCCCTTCCTACTGCTTCACTTCCGGAGCCTGCTTTGCCTCCCCAAGGCTCTCCTCCTGCTTCAATAGAGAATTCCTTTCCCGCTTCTCCAAAAGAACTTCCTGTTCCAATGATAGATGTTCCTGTGCCCTTAGATGATACTCCGTCAAAGAAGAAACTGGTACGCTCTAAGAATAAAAAAGGGATTCAAGATTCTGAAGAGCCTCAAGTTACTTTAATAGAGGCCTCTTCACTTCCAGAGCTCCCAGTCAATAACCAATACCCAGACCTTCCTTCAGAATCCATCAAAGAAGAAGATGGTGAATCCGCAGTCTCTGAGAAAGAAGAAAGCCAAGTGCCGACGATCATACCCAAGGTTGAGGAGACGTCTTTTTATGTTGAGGAACCAATTCAGAAGACGCGGCGACAGAGACGGGGCTGGCAGGAGTTGTTGTTGTCTATGCACTCGCCTGTCGCTTCACCACGCCGTCCCAGCTTCATGCCCCGCTCTGACTTCGAGGAGATGACCATATTGTATGACATCTGGAATGATGGCATTGACGAGGAGGACATCCGATACCTTAAGATCACCTACGACAAAATGCTTCAGCAAGATAATGCCCATGACTGGCTCAACGACACCCTCTGGGTCCACCATCCTCCTACCAACATGGGCAGTGCAACAGGGGTGAAGAAGAAGCGGAAAGAAGATGGTATACGTGATCATGTCACGGGCTGCGCCCGCAGCGAGGGTTACTACAAAATCGACAAGAAAGACAAAATGAAATACCTGAACAGCTCACGCTTGCAGTCTGAAGAGCCGGATGTGGACACTCAGGGAAAGAGTATACCAGCGCAGCCCCAAGTGTCCACCAGAGCAGGTTCAGAGCGGCGGTCCGAACAGCGGCGCTTGCTGTCGTCCTTCAGCTGTGACAGTGATCTCCTCAAGTTCAACCAGCTCAAGTTTCGTAAGAAGAAGATCCGCTTCTGTAGAAGTCACATTCACGACTGGGGATTGTTTGCCATGGAGCCTATTGCTGCTGATGAGATGGTTATTGAATACGTTGGCCAGAATATCCGACAGGTTATTGCAGACATGCGAGAGAAGCGCTATGAGGACGAAGGCATCGGTAGCAGCTACATGTTTCGTGTGGATCACGACACCATTATAGACGCAACCAAATGTGGCAACTTCGCTCGATTCATCAATCACAGTTGCAATCCAAACTGTTATGCCAAGGTCATCACTGTGGAGTCGCAGAAAAAGATCGTCATATACTCCCGGCAGCCAATCAATGTTAACGAGGAGATCACCTACGACTACAAGTTCCCCATCGAGGACGAGAAGATACCGTGCCTGTGTGGTGCCGAGAACTGCAGGGGAACGTTGAACTAACCCCAGCGGACCATAGGTGAGAACTTAAACACGCACTGCCCCACAACAAGCCCAGACGCCACGTCTTCTGGAGCGACAGAGGAACGGTGGATGAAACCAAACGCATCCACTGGATGTATCGTGCAGCTAAGCCTCTGGgacttcttcttctttttgtaCTTTTCTCATGATTGTTTACGAATTACAGGTGCTCTTTCAGGCATAAGAAATGAGTTTTCTACCACTCTTCCATTGACCTCAATAGAAACGGATTT

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0006325 chromatin organization biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0032259 methylation biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005694 chromosome cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-289 Predicted to enable RNA binding activity and histone-lysine N-methyltransferase activity. Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in chromosome and nuclear speck. Predicted to be part of Set1C/COMPASS complex. Is expressed in brain; cerebellum; and retinal neural layer. Orthologous to human SETD1B (SET domain containing 1B, histone lysine methyltransferase).

Ensembl:

ensembl_id ENSDART00000086165

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005938 lncRNA upstream 402 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004545 lncRNA upstream 32500 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00004529 lncRNA upstream 1021873 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00005733 lncRNA upstream 1356191 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 1450159 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00004551 lncRNA downstream 338271 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 342165 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00005939 lncRNA downstream 450276 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005940 lncRNA downstream 453879 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00005941 lncRNA downstream 700501 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00004543 mRNA upstream 26751 41945890 ~ 41959934 (+) False XLOC_002416
TCONS_00004542 mRNA upstream 26891 41939963 ~ 41959794 (+) False XLOC_002416
TCONS_00004544 mRNA upstream 26891 41945976 ~ 41959794 (+) False XLOC_002416
TCONS_00004541 mRNA upstream 65268 41914084 ~ 41921417 (+) True XLOC_002415
TCONS_00004539 mRNA upstream 169576 41765944 ~ 41817109 (+) True XLOC_002413
TCONS_00004548 mRNA downstream 139131 42159471 ~ 42162806 (+) True XLOC_002419
TCONS_00004549 mRNA downstream 149642 42169982 ~ 42179824 (+) True XLOC_002420
TCONS_00004550 mRNA downstream 338086 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004553 mRNA downstream 354430 42374770 ~ 42378524 (+) False XLOC_002422
TCONS_00004554 mRNA downstream 354617 42374957 ~ 42378508 (+) True XLOC_002422
TCONS_00004540 other upstream 146652 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1237787 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1346881 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1376732 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1377968 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 1016793 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2679477 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2887428 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 3156080 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 3217616 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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