Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004550 |
| length | 1743 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 15 |
| gene id | XLOC_002421 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 42358426 ~ 42372811 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006898 | receptor-mediated endocytosis | biological_process |
| GO:0045773 | positive regulation of axon extension | biological_process |
| GO:0048812 | neuron projection morphogenesis | biological_process |
| GO:0097178 | ruffle assembly | biological_process |
| GO:0061003 | positive regulation of dendritic spine morphogenesis | biological_process |
| GO:0030833 | regulation of actin filament polymerization | biological_process |
| GO:0098974 | postsynaptic actin cytoskeleton organization | biological_process |
| GO:0007416 | synapse assembly | biological_process |
| GO:0030425 | dendrite | cellular_component |
| GO:0030427 | site of polarized growth | cellular_component |
| GO:0005884 | actin filament | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0030864 | cortical actin cytoskeleton | cellular_component |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040704-42 | Predicted to enable actin filament binding activity. Predicted to be involved in generation of neurons; postsynaptic actin cytoskeleton organization; and regulation of actin filament polymerization. Predicted to act upstream of or within receptor-mediated endocytosis; ruffle assembly; and synapse assembly. Predicted to be located in several cellular components, including cytoplasmic vesicle; perikaryon; and ruffle. Predicted to be active in several cellular components, including lamellipodium; postsynaptic density; and postsynaptic membrane. Predicted to colocalize with actin filament. Is expressed in corneal epithelium. Orthologous to human DBNL (drebrin like). |
| ensembl_id | ENSDART00000025691 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005938 | lncRNA | upstream | 372143 | 41982997 ~ 41986283 (+) | True | XLOC_002417 |
| TCONS_00004545 | lncRNA | upstream | 404241 | 41951200 ~ 41954185 (+) | True | XLOC_002416 |
| TCONS_00004529 | lncRNA | upstream | 1393614 | 40939664 ~ 40964812 (+) | True | XLOC_002406 |
| TCONS_00005733 | lncRNA | upstream | 1727932 | 40629830 ~ 40630494 (+) | True | XLOC_002378 |
| TCONS_00005732 | lncRNA | upstream | 1821900 | 40535862 ~ 40536526 (+) | True | XLOC_002364 |
| TCONS_00005939 | lncRNA | downstream | 97805 | 42470616 ~ 42477259 (+) | False | XLOC_002424 |
| TCONS_00005940 | lncRNA | downstream | 101408 | 42474219 ~ 42477259 (+) | True | XLOC_002424 |
| TCONS_00005941 | lncRNA | downstream | 348030 | 42720841 ~ 42723221 (+) | True | XLOC_002429 |
| TCONS_00005942 | lncRNA | downstream | 357135 | 42729946 ~ 42731994 (+) | True | XLOC_002430 |
| TCONS_00005734 | lncRNA | downstream | 368274 | 42741085 ~ 42745580 (+) | True | XLOC_002432 |
| TCONS_00004549 | mRNA | upstream | 178602 | 42169982 ~ 42179824 (+) | True | XLOC_002420 |
| TCONS_00004548 | mRNA | upstream | 195620 | 42159471 ~ 42162806 (+) | True | XLOC_002419 |
| TCONS_00004547 | mRNA | upstream | 335860 | 41986709 ~ 42022566 (+) | True | XLOC_002418 |
| TCONS_00004546 | mRNA | upstream | 338086 | 41986685 ~ 42020340 (+) | False | XLOC_002418 |
| TCONS_00004543 | mRNA | upstream | 398492 | 41945890 ~ 41959934 (+) | False | XLOC_002416 |
| TCONS_00004553 | mRNA | downstream | 1959 | 42374770 ~ 42378524 (+) | False | XLOC_002422 |
| TCONS_00004554 | mRNA | downstream | 2146 | 42374957 ~ 42378508 (+) | True | XLOC_002422 |
| TCONS_00004555 | mRNA | downstream | 50507 | 42423318 ~ 42462963 (+) | False | XLOC_002423 |
| TCONS_00004556 | mRNA | downstream | 89766 | 42462577 ~ 42463859 (+) | True | XLOC_002423 |
| TCONS_00004557 | mRNA | downstream | 149132 | 42521943 ~ 42540839 (+) | False | XLOC_002425 |
| TCONS_00004540 | other | upstream | 518393 | 41839919 ~ 41840033 (+) | True | XLOC_002414 |
| TCONS_00004521 | other | upstream | 1609528 | 40747873 ~ 40748898 (+) | True | XLOC_002398 |
| TCONS_00004501 | other | upstream | 1718622 | 40638776 ~ 40639804 (+) | True | XLOC_002380 |
| TCONS_00004496 | other | upstream | 1748473 | 40609461 ~ 40609953 (+) | True | XLOC_002376 |
| TCONS_00004495 | other | upstream | 1749709 | 40607701 ~ 40608717 (+) | True | XLOC_002375 |
| TCONS_00004569 | other | downstream | 664322 | 43037133 ~ 43073256 (+) | False | XLOC_002435 |
| TCONS_00004603 | other | downstream | 2327006 | 44699817 ~ 44713817 (+) | False | XLOC_002452 |
| TCONS_00004611 | other | downstream | 2534957 | 44907768 ~ 44907883 (+) | True | XLOC_002456 |
| TCONS_00004628 | other | downstream | 2803609 | 45176420 ~ 45176924 (+) | True | XLOC_002466 |
| TCONS_00004629 | other | downstream | 2865145 | 45237956 ~ 45238042 (+) | True | XLOC_002467 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000158_00816429_00823573.mRNA | True | 1920 | mRNA | 0.45 | 13 | CI01000158 | 816029 ~ 823704 (+) |
