RNA id: TCONS_00004557


Basic Information

Item Value
RNA id TCONS_00004557
length 2540
RNA type mRNA
GC content 0.46
exon number 11
gene id XLOC_002425
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42521943 ~ 42540839 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGCTGTTTCATTGGCTCCCTCCGCGGTGAGGTTTGGTTGACGCATCACCGCTCAGCCAGGGTTTTTACTGCTGAGCAGCGacggttatttttatttacatgcaCAGAAAATCATAAACGGGGCTTCTTGCGAACGAATTGACCGAAAAACGCAGCCAAGCGCAGGTTGAACATGGAGTCGTATGATATTATAGCCAACCAGCCGGTTGTGATTGATAATGGGTCGGGAGTTATCAAGGCAGGCTTTGCTGGAGATCAGATCCCCAAATACTGTTTTCCAAATTATGTGGGTCGACCCAAGCATGTTCGGGTGATGGCTGGTGCACTGGAAGGCGATCTGTTTATTGGACCTAAAGCAGAGGAGCACCGGGGTCTGCTGTCTGTTCGGTACCCAATGGAACATGGGATTGTGAAAGACTGGAACGACATGGAGCGCATCTGGCAGTACGTGTACTCGAAGGAGCAGCTGCAGACCTTCTCTGAGGAGCATCCTGTACTGTTGACGGAAGCCCCGCTGAACCCCAGTAAAAACCGTGAGCGAGCAGCAGAGGTGTTCTTCGAGACCTTCAACGTGCCTGCGCTCTTCATCTCCATGCAGGCGGTTCTCAGTTTATACGCCACAGGCCGAACCACAGGTGTGGTGCTGGACGCTGGTGACGGTGTGACTCACGCCGTGCCCATATACGAGGGATTCGCCATTCCTCACTCCATTATGCGTGTGGATATAGCTGGACGGGACGTCTCCCGGTACCTCCGTCTCCTCCTGCGCAAGGAAGGCTATGATTTCCACACCTCTGCAGAGTTTGAGGTGGTGCGCACCATCAAGGAGAGAGCCTGCTACCTCTCCCTCAACCCTCAGAAGGATGAAACTCTAGAAACTGAAAAAGCACAGTATACCCTCCCTGACGGAAGCACTCTAGATATCGGCCCTGCGCGGTTTAGGGCTCCGGAGCTTCTCTTCAGGCCAGATCTGATTGGAGACGAGAGCGAGGGCATTCATGAGGTGCTGGCCTTCGCCATTCAGAAGTCCGACATGGATCTGCGACGCACGCTCTTCTCAAACATAGTGCTGTCCGGAGGCTCGACGCTCCTCAAAGGTTTTGGAGACCGGTTGTTAAGCGAAGTGAAGAAACTTGCCCCCAAAGACGTTAAAATTAAGATATCTGCACCGCAGGAGAGACTTTACTCAACATGGATAGGgGGATCCATCCTAGCATCACTCGACACCTTTAAGAAAATGTGGGTCTCCAAGAAGGAATATGAGGAAGATCGTGCGCGCGCCATTCACCGGAAGACATTTTAACAGGGCTTAAAAGTCCGCCAGCCTCCCTCTCATCTCTGCGGTTTCACATCCCCTTCTCTCGCTTGACCTCTCCCCTCTGTTTTCTCCCTTTCTCTCCACCCAAATCCCTTAAATCCTCCATCCGCAGTGAAGGCTTGCCCTCCGCGTCCCTTGCCCAGGACATCGGCAAAAAAAAAATCGGGACGCAACCGGACATCCCTTGCACCCATCAGTCACCGATTTCAGGGCATCAGTCAAtactgtttcattttaaaaagccaaTGCTTCAATTCAGCGCttacatgtatgtatttattacacTATTATACCCTGTATGATACCGTCATATCTAATGCAAAACATGAAGGTGAATGTTTCACTCGGTTGTAAGAATTTCATTCCAGAAAACGAAGATTTATCGTTTTATTTAGACGTCAACgttgtatttttattcattcgaTGCATCGCTCACTATTACAACAGTTGGCTTTAATAGACACTACTGTGTTTGCTGTCATTTCCCTTCACCGGGAGCTAAATGATGTAAACAGAAGCACACGGTAGGCTAGATTCATCGCTGCTTCAATtaaaagtgttattattattgatataaagCACATTTTGTTCGTTAAAAGGAGTGAGTGGAAACGCATCAAGTTGTTTAccgtctttttttgttgttgaattatGTAATTGACTTGATGCAAGCATTAGCCCCTTCGACTTGACTACATTTCCCATGATTCTCATGTAGTTTTGAGAAGCAGAGCTTTAATGAAGTCGTCCAGTGAGTTCTACCATCATTGTGGCACGATGTAAATTCTGACTCTTCCCCGAAATCTCCAGATTTAGTGCATGAAATCAACAACGGCGACCGAGATTGTGTCATTTCTGTGTAAATCTCATGGTTTTTGAAGGCTGAATGGATTTCTGAGCTCTTCTGGCACTAGTATTTCAGTAGTGTTTGTCGGGATGATGGGTAGCAGGGTTGCGTTGAAGTCCAGTTTGTCCTGACTGAGATCCGCCTCTAAGATCCGTCATTGGGATGTAGAGCATCTTGGTCGTTTTTCTTTTTAAGAGATATAGAAATATCATCATAAGCCTTGTGTACAGTGGGTTGCTattcaaaactgttaaaaaaaaaaaagaaaaacgaaaaaaaataagGACTAAAATGTACAAACCGGTTTCTTCAATTGTtgctttttcttttaattttgtaaattcagtatgatgaataaattaatgctGTCTGAA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko05132 Salmonella infection
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2695 Orthologous to several human genes including ACTR1B (actin related protein 1B).

Ensembl:

ensembl_id ENSDART00000010420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005939 lncRNA upstream 44684 42470616 ~ 42477259 (+) False XLOC_002424
TCONS_00005940 lncRNA upstream 44684 42474219 ~ 42477259 (+) True XLOC_002424
TCONS_00004552 lncRNA upstream 158622 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00004551 lncRNA upstream 160596 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00005938 lncRNA upstream 535660 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00005941 lncRNA downstream 180002 42720841 ~ 42723221 (+) True XLOC_002429
TCONS_00005942 lncRNA downstream 189107 42729946 ~ 42731994 (+) True XLOC_002430
TCONS_00005734 lncRNA downstream 200246 42741085 ~ 42745580 (+) True XLOC_002432
TCONS_00005943 lncRNA downstream 278887 42819726 ~ 42820906 (+) True XLOC_002433
TCONS_00004580 lncRNA downstream 893390 43434229 ~ 43442056 (+) True XLOC_002438
TCONS_00004556 mRNA upstream 58084 42462577 ~ 42463859 (+) True XLOC_002423
TCONS_00004555 mRNA upstream 58980 42423318 ~ 42462963 (+) False XLOC_002423
TCONS_00004553 mRNA upstream 143419 42374770 ~ 42378524 (+) False XLOC_002422
TCONS_00004554 mRNA upstream 143435 42374957 ~ 42378508 (+) True XLOC_002422
TCONS_00004550 mRNA upstream 149132 42358426 ~ 42372811 (+) False XLOC_002421
TCONS_00004559 mRNA downstream 1678 42542517 ~ 42555822 (+) True XLOC_002426
TCONS_00004561 mRNA downstream 48552 42589391 ~ 42661445 (+) False XLOC_002427
TCONS_00004560 mRNA downstream 48552 42589391 ~ 42661445 (+) False XLOC_002427
TCONS_00004562 mRNA downstream 48868 42589707 ~ 42639582 (+) True XLOC_002427
TCONS_00004563 mRNA downstream 137681 42678520 ~ 42716739 (+) False XLOC_002428
TCONS_00004540 other upstream 681910 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 1773045 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 1882139 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 1911990 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 1913226 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004569 other downstream 496294 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 2158978 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 2366929 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 2635581 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 2697117 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000158_00878419_00882435.mRNA True 1277 mRNA 0.49 9 CI01000158 878108 ~ 882435 (+)