Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004561 |
| length | 2814 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 16 |
| gene id | XLOC_002427 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 42589391 ~ 42661445 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0045597 | positive regulation of cell differentiation | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017134 | fibroblast growth factor binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0005007 | fibroblast growth factor-activated receptor activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-14 | Predicted to enable fibroblast growth factor binding activity and fibroblast growth factor-activated receptor activity. Acts upstream of or within fibroblast growth factor receptor signaling pathway and post-anal tail morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including basal plate midbrain region; forebrain neural keel; forebrain neural rod; head; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including Jackson-Weiss syndrome; bone disease (multiple); cleft lip; hematologic cancer (multiple); and hypogonadotropic hypogonadism (multiple). Orthologous to human FGFR1 (fibroblast growth factor receptor 1). |
| ensembl_id | ENSDART00000075259 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005939 | lncRNA | upstream | 112132 | 42470616 ~ 42477259 (+) | False | XLOC_002424 |
| TCONS_00005940 | lncRNA | upstream | 112132 | 42474219 ~ 42477259 (+) | True | XLOC_002424 |
| TCONS_00004552 | lncRNA | upstream | 226070 | 42362505 ~ 42363321 (+) | True | XLOC_002421 |
| TCONS_00004551 | lncRNA | upstream | 228044 | 42358611 ~ 42361347 (+) | False | XLOC_002421 |
| TCONS_00005938 | lncRNA | upstream | 603108 | 41982997 ~ 41986283 (+) | True | XLOC_002417 |
| TCONS_00005941 | lncRNA | downstream | 59396 | 42720841 ~ 42723221 (+) | True | XLOC_002429 |
| TCONS_00005942 | lncRNA | downstream | 68501 | 42729946 ~ 42731994 (+) | True | XLOC_002430 |
| TCONS_00005734 | lncRNA | downstream | 79640 | 42741085 ~ 42745580 (+) | True | XLOC_002432 |
| TCONS_00005943 | lncRNA | downstream | 158281 | 42819726 ~ 42820906 (+) | True | XLOC_002433 |
| TCONS_00004580 | lncRNA | downstream | 772784 | 43434229 ~ 43442056 (+) | True | XLOC_002438 |
| TCONS_00004559 | mRNA | upstream | 33569 | 42542517 ~ 42555822 (+) | True | XLOC_002426 |
| TCONS_00004557 | mRNA | upstream | 48552 | 42521943 ~ 42540839 (+) | False | XLOC_002425 |
| TCONS_00004558 | mRNA | upstream | 48662 | 42521979 ~ 42540729 (+) | True | XLOC_002425 |
| TCONS_00004556 | mRNA | upstream | 125532 | 42462577 ~ 42463859 (+) | True | XLOC_002423 |
| TCONS_00004555 | mRNA | upstream | 126428 | 42423318 ~ 42462963 (+) | False | XLOC_002423 |
| TCONS_00004563 | mRNA | downstream | 17075 | 42678520 ~ 42716739 (+) | False | XLOC_002428 |
| TCONS_00004564 | mRNA | downstream | 28929 | 42690374 ~ 42716739 (+) | False | XLOC_002428 |
| TCONS_00004565 | mRNA | downstream | 29765 | 42691210 ~ 42691824 (+) | True | XLOC_002428 |
| TCONS_00004566 | mRNA | downstream | 71765 | 42733210 ~ 42740662 (+) | True | XLOC_002431 |
| TCONS_00004567 | mRNA | downstream | 236658 | 42898103 ~ 42903716 (+) | True | XLOC_002434 |
| TCONS_00004540 | other | upstream | 749358 | 41839919 ~ 41840033 (+) | True | XLOC_002414 |
| TCONS_00004521 | other | upstream | 1840493 | 40747873 ~ 40748898 (+) | True | XLOC_002398 |
| TCONS_00004501 | other | upstream | 1949587 | 40638776 ~ 40639804 (+) | True | XLOC_002380 |
| TCONS_00004496 | other | upstream | 1979438 | 40609461 ~ 40609953 (+) | True | XLOC_002376 |
| TCONS_00004495 | other | upstream | 1980674 | 40607701 ~ 40608717 (+) | True | XLOC_002375 |
| TCONS_00004569 | other | downstream | 375688 | 43037133 ~ 43073256 (+) | False | XLOC_002435 |
| TCONS_00004603 | other | downstream | 2038372 | 44699817 ~ 44713817 (+) | False | XLOC_002452 |
| TCONS_00004611 | other | downstream | 2246323 | 44907768 ~ 44907883 (+) | True | XLOC_002456 |
| TCONS_00004628 | other | downstream | 2514975 | 45176420 ~ 45176924 (+) | True | XLOC_002466 |
| TCONS_00004629 | other | downstream | 2576511 | 45237956 ~ 45238042 (+) | True | XLOC_002467 |
