RNA id: TCONS_00004523


Basic Information

Item Value
RNA id TCONS_00004523
length 1035
RNA type mRNA
GC content 0.38
exon number 1
gene id XLOC_002400
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40762200 ~ 40763234 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCAGAACAAACAGAAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTGAAGAAACAACGCTCCAGTCATGaatataattttatgtatttgttttttccattgctgtcagcatggactgtgtttctgaacctgctggtgatcatctccatctctcacttcaagaagcttcacactccaaccaacatgattattctctctctgtctgtggcTGATCTGCTAATTGGACTTGTCATGCCTATAGAGGCCATCAGACTGATCGAGACGTGTTGGTATTTTGGAGACACTTTCTGTGgtttcaatttaataataattgggGCGATTCTCTCAGCATCTGttagtaatttagttttaattgctGTCGATCGTTATGTGGCTGTGTGTTACCCTTTACTGTACCCACAGAAAATAACCATCTCTAACATGTTGATTAGTATCTGTCTGAGCTGGGTTTACTACTCCGCTTATAACACTGtccttattattaataatggatATTTTGACACTTCATACAGAACAGACATGTGTTATGGACAGTGTTCAGCCATGATGAGTTTTACTTGGATACTCACtgatctgtttgtgtgttttaccTTTCCCTGTGTGATAATCATCACTTTATATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACGGATGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCAGTGTATATGCTTTGCTGGATTCCTTACTATATCTGTGCTTTATCTGTAAACTCTTCCACAGTTTTAAGTGTTTTGACATGGGTTGTGTATGCTAACTCTGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAAAAGACAGTTAAAGTCATCTTAACTCTGAAAATATTTGAGCCGGCATCCTCTCTGGTCAATATTTTTATAGAAAATGAATTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060413-17 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000161000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005733 lncRNA upstream 131706 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00005732 lncRNA upstream 225674 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005937 lncRNA upstream 481198 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005935 lncRNA upstream 563368 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00004529 lncRNA downstream 176430 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00004545 lncRNA downstream 1187966 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00005938 lncRNA downstream 1219763 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004551 lncRNA downstream 1595377 42358611 ~ 42361347 (+) False XLOC_002421
TCONS_00004552 lncRNA downstream 1599271 42362505 ~ 42363321 (+) True XLOC_002421
TCONS_00004522 mRNA upstream 4811 40756352 ~ 40757389 (+) True XLOC_002399
TCONS_00004520 mRNA upstream 18454 40742685 ~ 40743746 (+) True XLOC_002397
TCONS_00004519 mRNA upstream 23635 40737540 ~ 40738565 (+) True XLOC_002396
TCONS_00004518 mRNA upstream 29305 40731834 ~ 40732895 (+) True XLOC_002395
TCONS_00004517 mRNA upstream 34770 40726399 ~ 40727430 (+) True XLOC_002391
TCONS_00004524 mRNA downstream 4969 40768203 ~ 40769264 (+) True XLOC_002401
TCONS_00004525 mRNA downstream 10981 40774215 ~ 40775243 (+) True XLOC_002402
TCONS_00004526 mRNA downstream 17818 40781052 ~ 40782113 (+) True XLOC_002403
TCONS_00004527 mRNA downstream 28844 40792078 ~ 40799857 (+) True XLOC_002404
TCONS_00004528 mRNA downstream 73144 40836378 ~ 40851677 (+) True XLOC_002405
TCONS_00004521 other upstream 13302 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 122396 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 152247 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004495 other upstream 153483 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004493 other upstream 161698 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004540 other downstream 1076685 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004569 other downstream 2273899 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004603 other downstream 3936583 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 4144534 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 4413186 45176420 ~ 45176924 (+) True XLOC_002466