RNA id: TCONS_00004588


Basic Information

Item Value
RNA id TCONS_00004588
length 2106
RNA type mRNA
GC content 0.52
exon number 22
gene id XLOC_002445
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44055749 ~ 44198211 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGGACCTCGAAGCAGTTCTCGCCGACGTCAGTTACCTGATGGCGATGGAGAAGAGCAAATCGACTCCAGCGGCCCGCGCGAGCAAGAAAATCATCCTCCCcgaacccagTATTCGAAGTGTCATGCAGAAGTATCTGGAGGAAAGGGATGAACTGGCGTTTGACAAAATCTTCAACCAGAAGATCGGTTTCCTCCTCTTCAAGGATTTCTGCATGAACGAGATCGACGAGGCCGTTCCGCAGCTCAAGTTTTACGaggagATTAAAGAGTACGAGAAGTTGGACTCAGAAGAGGAGAGGCTAACTCGCAGTCGACAGATTTATGACGTCTACATAATGAAGGAGCTGCTTTCATGTTCACATCCCTTCTCCAAGAAAGCCGTCGACCATGTCCAGACTCACCTAGCAAAGAAACAAGTTCCTCCAAATCTCTTTCAGCCATATATTGTTGAAATCTGTGACAGTCTTCGAGGGAATATCTTTCAGAAGTTCATTGAAAGTGACAAGTTTACACGTTTCTGCCAGTGGAAGAATGTAGAGCTCAACATCcatTTGACAATGAATGACTTCAGCGTGCACCGCATCATCGGCAGAGGAGGCTTTGGAGAGGTTTATGGATGCAGAAAGGCAGACACGGGGAAGATGTATGCTATGAAGTGTCTGGATAAAAAGCGTATCAAAATGAAGCAGGGAGAAACTCTGGCGCTTAATGAGAGAATCATGCTGTCGCTGGTCAGCACCGGGGACTGCCCGTTCATAGTGTGTATGACATATGCCTTCCACACCCCTGATAAACTGTGCTTCATCCTGGACCTGATGAACGGTGGAGACCTCCACTATCACCTGTCTCAGCACGGCGTCTTCAGCGAGAAGGACATGCGCTTTTATGCAGCGGAGATCATTCTGGGCCTCGAACACATGCACAACCGCTTCGTCGTCTACAGAGACCTCAAGCCTGCGAATATCCTCTTAGATGAGCACGGACACGTCCGCATCTCTGACCTGGGTCTGGCCTGTGATTTCTCCAAGAAGAAGCCTCACGCCAGCGTAGGGACTCATGGCTACATGGCACCTGAGGTTCTGCAGAAGGGAACGGCGTACGACAGCAGCGCCGACTGGTTCTCTCTGGGCTGCATGCTGTTCAAACTCCTGCGAGGGCACAGTCCATTCAGGCAGCACAAGACCAAAGACAAACACGAGATCGACCGCATGACGCTTACCATGAATGTGGAGTTGCCTGATTCCTTCACTCCCGAGCTCAAGTCTCTCCTGGAAGGACTCCTACAGCGAGATGTGGCCAAACGATTGGGCTGCCTGGGACGAGGGGCGTCAGAGGTGAAGGAGCACGTGTTCTTCAAGGGAATCGATTGGCAGCAGGTTTATCTCCAGAAGTATCCTCCACCACTCATCCCCCCCAGAGGAGAGGTCAACGCTGCGGACGCCTTCGACATCGGCTCCTTCGACGAAGAGGACACCAAGGGAATCAAGCTTCTGGACAGCGATCAGGAGCTGTATAAGAACTTTCCGCTGGTGATCTCCGAGCGCTGGCAGCAGGAGGTGGCCGAGACCGTGTATGAAGCTGTGAACAGCGACACGGATAAAAACGAGGCTCGCAAGAGGGCCAAAAACAAGCAGCAAGGCCACGAAGAAGATTACGCGCTGGGGAAGGACTGCATCATGCACGGCTACATGCTAAAGCTAGGAAACCCCTTCCTGACGCAGTGGCAGCGGCGCTATTTCTATCTGTTCCCCAACCGTGTGGAGTGGAGAGGTGAAGGAGAGTCTCGGGAATGTTGGACTAAAacgttaaaaaaacataaattcaaGCAAAACCTGCTGACCATGGAGCATATCGTGACGGTGGAGGAGACGCAGATCAAGGACAAGAAGTGCATCCTGCTGAGGGTTAAAGGAGGGAAGCAGTTCGTCCTGCAGTGTGAGAGCGACCCAGAGTTCGTCCAGTGGAAGAAGGAGCTGACCGAAGCGTTCACCGAGGCCCAGAAGCTGCTGCGTCGAGCTCCTAAAGTCATCGGCAAGGGCAGAACTAACGTGGTGGAGCTCTCCAAACCTCCGCTCACACACCGCAACAGCAACGGCCTGTGA

Function

GO:

id name namespace
GO:0065008 regulation of biological quality biological_process
GO:0065009 regulation of molecular function biological_process
GO:0010646 regulation of cell communication biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030616-382 Enables protein kinase activity. Acts upstream of or within several processes, including heart rudiment formation; muscle cell development; and smoothened signaling pathway. Is expressed in several structures, including heart; immature eye; nervous system; notochord; and tail bud. Orthologous to several human genes including GRK3 (G protein-coupled receptor kinase 3).

Ensembl:

ensembl_id ENSDART00000183868

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005948 lncRNA upstream 198 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 32851 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005947 lncRNA upstream 119214 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 215300 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00005944 lncRNA upstream 532289 43518594 ~ 43525213 (+) False XLOC_002439
TCONS_00005949 lncRNA downstream 182771 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00004606 lncRNA downstream 569177 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 715396 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 942733 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 1157492 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004586 mRNA upstream 5694 44042033 ~ 44051808 (+) False XLOC_002444
TCONS_00004585 mRNA upstream 5694 44042033 ~ 44051808 (+) True XLOC_002444
TCONS_00004583 mRNA upstream 61385 43994471 ~ 43996117 (+) False XLOC_002443
TCONS_00004584 mRNA upstream 62272 43994570 ~ 43995230 (+) True XLOC_002443
TCONS_00004581 mRNA upstream 249305 43797130 ~ 43808197 (+) True XLOC_002440
TCONS_00004590 mRNA downstream 164984 44363195 ~ 44373370 (+) False XLOC_002446
TCONS_00004591 mRNA downstream 175138 44373349 ~ 44378081 (+) True XLOC_002446
TCONS_00004593 mRNA downstream 238869 44437080 ~ 44444714 (+) False XLOC_002448
TCONS_00004592 mRNA downstream 238869 44437080 ~ 44444714 (+) True XLOC_002448
TCONS_00004594 mRNA downstream 383167 44581378 ~ 44672402 (+) False XLOC_002449
TCONS_00004569 other upstream 984246 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2217469 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3308604 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 3417698 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 3447549 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 501606 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 709557 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 978209 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 1039745 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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