RNA id: TCONS_00004597


Basic Information

Item Value
RNA id TCONS_00004597
length 2939
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_002450
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 44677632 ~ 44691944 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTTCAGCCTGTGAgtatgtgtttgtgcgtgttcAGTCCTGCAGAGATCATGCAGATTCACTGCTCGGTGCCTGAAGAGTgatgcggctgtcaatcaaacGGACACTTTTCCTTCTGTTTACTCTGTTCGGAGGATATACACTTATCAGGACTCTATATCGCGTTATAGCGTGCCACGGAAAGCTGACCGGAGCTCATGTGGTGTCTGTCCTGGTACAGAACCGGACCCGGTATCGATATGACCGGAACACACCGATCGTGTTTGTGGGCGGAGTCCCGCGCTCGGGAACGACACTGATGCGCGCGATGCTGGACGCACACCCGCTGATCCGCTGCGGGGCGGAGACGCGCGTGATCCCCCGGGTGCTGTCGCTGCGGCAGGCCGGCACGGAGCAGCCCGGAGTCGATCAGGAGATTCTGGATGCCGCGACAACCGCATTCCTGCTGGAGGTCATCGCTCGGCACGGAGAACCGGCGCCAATGCTCTGCAATAAAGACCCGTTCACTCTGAAGAGTGCTGTCTATCTGTCACACCTGTTCCCCAACTCTAAGTTTGTGCTGATGCTCAGAGACGGCAGGGCGTCCGTGCACTCCATGATCTCCAGACGGGTCACCATCGCCGGCTTCGACCTGTCCAGCTACAGAGACTGTCTGACTAAGTGGAGCAGCGCCATTCAGGCCATGCTGTCCCAGTGCATGGCTGTGGGCTCACGCCGCTGTCTCACCGTCCGATATGAGGATCTGGTGCTGCGACCGCGAACCTCCATGCAGAGAGTGCTGCTTTTCCTCCAATCGCCCTGGCACGAAGGAGTTTTACACCACGAGGAGGCCATCGGACAGCCCGGAGGGGTTTCACTGTCACGaactGAACGCTCCACGGATCAGGTGATCAAACCTGTGAACCTGGAAGCTCTGACACGGTGGGTCGGCCACATCCCAGCAGACGTGCAGGACGACCTGGAGAATATCGCACCCATGCTGCGCCGGCTGGGCTACAACCCCAACGCCAATCCTCCAGACTACGGCCAGCCAGATCCTGAAGTCATCAACAATACTCAGAGGGTACTGAAAGGAGATTTTAAAATTCCCAGGAGCCTGAAAAAATGGGCACAGGAATCTCCAATTATAGGTTCTAAAGGAGGCAGAAAGTGAACCAAGCTCTGCATTGCCATacagtacaatatatatatttaaatatattacaatattcaattatccattcattttcttttcggcttagtccctttattaatctgtggtcgccacagcggaatgaaccgccaacttattcagcatatcgtcaccttggcgttataaggttctatctgctttctgaatgattttgagatattgagcttctaatgtttttgcattccataaagCAAACAGtacgtgtgtaacatttgttttttagataaaaggtcttaaaatgtaaacaacttataaaaacatcccataatataagttgtcatttaataagaatatgtcaataattcaattttaacaaaaatatcagatagaaccttacaattctAAGGTGACTATAtgtttttccagctgcaacccataactgggaaacacccatacacaatcattcacacaaatctactatagccaatttagcttacccaattcccctatagcacgtgtttggactgggggaaatcagagcaactggagaaaacccatgccaacgcagggagaacatgcaaaccgacccagccgaggctcgaaccagcgaccttcttgctgtgaggttacagtgctaCCCATcgtgccactgtgctgcccatattcctatatataaaatatattttgaaatatatttaagaaaatatattttggggaatattaaaaagtattttgcaatatattttctgcaaaaacttttttaataccatttttgaaaatacatttttcaaataatatattttagaatcGCTTAAAATGTTTTACCCTCCACATATTTCAATTCAaggaaaaaaatgcatgtaacattttaagaaaatctttattaattcattgttttattcttgCTAAACTTTTgcctctgttttgttttgttcatttattcattttcttgtcggcttagtccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaagtttttacgcagcggatgcccttccagccgcaacccatctctgggaaatgttttgttttaattgcattaaatatttaatataatatctttaaataataaaaacctttatcACACACATTGTAGCCAACTGGAAGGTATGAAATATCTCatgttttgaaatatatttaggttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaacatcacagataaaacatataattttttttatttagaatatatgaaaataaaatatttactgtttGGGTTGATTGCAGTATGTGCTTGTTTACAGCTCTGGAGTTTTTCGGTTTGTGTGATAAACATTGGAAGACTTTCTGAGATCATCCTGAGAATCAGTGTTGTTGTTTACTCACTGTGTGTTAAtggatttttacattattttacatgcTGAGTTGTTGTAATGCAGAAAACTGATGTGAAAAATTACATTAAAGGgcaaatacctttttaacttccTCGTGCTCTCAAAAGAGAATTGTTCTCTTCATAAAGGAAGTGAACCATCGTTTATTTGCACTGGACTTCCTGAAAACACCGCAGTTTTATGTCTTGTTTTGGGAAATGAAAAGATCTGTGACGTTTGGTGACGCTGTTGCTATGTGTCCGTTTTCTTGACCTAGTTTTTATTAAATGGACCTATTCATGTTTTCCTTATGCCGGAACATTCCCTTTCCCCTCAATGTGCACTATTTCAATAAACGTATTTCATACA

Function

GO:

id name namespace
GO:0006478 peptidyl-tyrosine sulfation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008476 protein-tyrosine sulfotransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1400 Predicted to enable protein-tyrosine sulfotransferase activity. Predicted to be involved in peptidyl-tyrosine sulfation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human TPST2 (tyrosylprotein sulfotransferase 2).

Ensembl:

ensembl_id ENSDART00000171035

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005949 lncRNA upstream 294173 44380982 ~ 44383459 (+) True XLOC_002447
TCONS_00005948 lncRNA upstream 620328 44055749 ~ 44057304 (+) False XLOC_002445
TCONS_00004582 lncRNA upstream 652981 43993352 ~ 44024651 (+) True XLOC_002442
TCONS_00005947 lncRNA upstream 739344 43828327 ~ 43938288 (+) True XLOC_002441
TCONS_00005946 lncRNA upstream 835430 43828327 ~ 43842202 (+) False XLOC_002441
TCONS_00004606 lncRNA downstream 75444 44767388 ~ 44769521 (+) True XLOC_002453
TCONS_00005950 lncRNA downstream 221663 44913607 ~ 44917399 (+) True XLOC_002457
TCONS_00005951 lncRNA downstream 449000 45140944 ~ 45145137 (+) True XLOC_002465
TCONS_00005952 lncRNA downstream 663759 45355703 ~ 45356324 (+) True XLOC_002470
TCONS_00004594 mRNA upstream 5230 44581378 ~ 44672402 (+) False XLOC_002449
TCONS_00004595 mRNA upstream 5230 44584614 ~ 44672402 (+) False XLOC_002449
TCONS_00004596 mRNA upstream 5261 44641599 ~ 44672371 (+) True XLOC_002449
TCONS_00004593 mRNA upstream 232918 44437080 ~ 44444714 (+) False XLOC_002448
TCONS_00004592 mRNA upstream 232918 44437080 ~ 44444714 (+) True XLOC_002448
TCONS_00004598 mRNA downstream 328 44692272 ~ 44694732 (+) True XLOC_002451
TCONS_00004599 mRNA downstream 7790 44699734 ~ 44746527 (+) False XLOC_002452
TCONS_00004602 mRNA downstream 7792 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004601 mRNA downstream 7792 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004600 mRNA downstream 7792 44699736 ~ 44748270 (+) False XLOC_002452
TCONS_00004569 other upstream 1604376 43037133 ~ 43073256 (+) False XLOC_002435
TCONS_00004540 other upstream 2837599 41839919 ~ 41840033 (+) True XLOC_002414
TCONS_00004521 other upstream 3928734 40747873 ~ 40748898 (+) True XLOC_002398
TCONS_00004501 other upstream 4037828 40638776 ~ 40639804 (+) True XLOC_002380
TCONS_00004496 other upstream 4067679 40609461 ~ 40609953 (+) True XLOC_002376
TCONS_00004603 other downstream 7873 44699817 ~ 44713817 (+) False XLOC_002452
TCONS_00004611 other downstream 215824 44907768 ~ 44907883 (+) True XLOC_002456
TCONS_00004628 other downstream 484476 45176420 ~ 45176924 (+) True XLOC_002466
TCONS_00004629 other downstream 546012 45237956 ~ 45238042 (+) True XLOC_002467

Expression Profile

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