XLOC_002370 (si:ch211-238p8.18)


Basic Information

Item Value
gene id XLOC_002370
gene name si:ch211-238p8.18
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40578332 ~ 40579363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004490
aacaaactcctaACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTATCAAGGGAAAACGCTCCAAACATGAATACAATATCTTTTACATATTTGTATTGTTAATGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACCTGCTCATTCTCTCTCTGGCTGTGGCTGATTTATTTGTTGGACTTATTGTGATACCAACCGAGGGTATCAAGCAAATTGAGACATGTTGGTACTTTGGAGACACTTTCTGTGGACTGTTTGTAATCATCGTTGGGTTGCTCCTTTCAGCATCTCttagtaatttagttttaattgctGTTGATCGTTATATTGCTGTGTGTTATTCCTTACAGTACCCACAAAGAATAACCAAAACTAAAACTGTAATAAGCATCTGTCTTTGTTGGTTTTCCTGTTCAGTTTACAATATTTGGTATGTCATTGGTAACGGGTATTTTAGCATGTCTGACAAAACACTGTGTTATGGCCAGTGCATGGTTGTGATTACTCCAACTTGGAGATTTATAGATTTAATATTTTCCTTCCTTTTTCCTTGTACTGTGATCATCACTGCATATGTGAGGATATTTTATGTTGTACACAAGCAAGTGAAAGTTATAAACTCTCAAATAAATGGTGTAAAATGTGTAATGGAGGTTTCAATCAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACATTGGGAATCATTGTGACAGCTTATCTGCTTTGCTGGATTCCTTTTTATATTTGTTCTCTAACAAAAATCACAACGATCACATCCACTACTATGACACTACTAGTATGGACCTTTCATTTAAACTCAGGTCTAAATCCTATCGTCTATGCTTTGTTTTATCGCTGGTTTAAAACATCAGTTAAACACATTGTAACTCTCAGAATATTTCAGCCAGCATCCTCTCTAATGGACATTTTTACAGAT

Function

symbol description
si:ch211-238p8.18 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-19 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000115263

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004490 True 1032 mRNA 0.37 1 40578332 40579363

Neighbor

gene id symbol gene type direction distance location
XLOC_002369 taar18i coding upstream 8566 40568735 ~ 40569766 (+)
XLOC_002368 taar18h coding upstream 15615 40561692 ~ 40562717 (+)
XLOC_002367 CR396590.5 coding upstream 23201 40554917 ~ 40555131 (+)
XLOC_002366 CR396590.2 coding upstream 27378 40550730 ~ 40550954 (+)
XLOC_002365 si:ch211-238p8.10 coding upstream 28691 40548616 ~ 40549641 (+)
XLOC_002371 taar18j coding downstream 4567 40583930 ~ 40584955 (+)
XLOC_002372 taar17a coding downstream 19428 40598791 ~ 40599801 (+)
XLOC_002373 CR396590.8 coding downstream 20572 40599935 ~ 40600502 (+)
XLOC_002374 si:ch211-238p8.24 coding downstream 26721 40606084 ~ 40607106 (+)
XLOC_002375 CR396590.7 coding downstream 28338 40607701 ~ 40608717 (+)
XLOC_002364 NA non-coding upstream 41806 40535862 ~ 40536526 (+)
XLOC_002361 NA non-coding upstream 297330 40122374 ~ 40281002 (+)
XLOC_002359 NA non-coding upstream 660824 39909138 ~ 39917508 (+)
XLOC_002376 CR396590.3 non-coding downstream 30098 40609461 ~ 40609953 (+)
XLOC_002380 CR396590.1 non-coding downstream 59413 40638776 ~ 40639804 (+)
XLOC_002398 BX001050.2 non-coding downstream 168510 40747873 ~ 40748898 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00118020_00119030 NA coding CI01000158 null 117955 ~ 119653 (+)