XLOC_023660 (BX001030.1)


Basic Information

Item Value
gene id XLOC_023660
gene name BX001030.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38098896 ~ 38099675 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046699
AATCATTTTCTTCCTCTTCAGAGCTGCAGAAAGATGTCTCTTTTATTTCTCTGTCTGCTCTCTCTGACCCCTGCAGTGGCTACCGAagGGGGTCTCAGTGGAAAAGTGCTTCTGTTTACAGCCAGGACTAACACCAGCTATGTTAAACTCATTCCTGATAAACACCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTGGCGACGGAGCTGCTGGGATTTAGGGAAGTCATCTTGTTCGCCTACCGCACGCCTGAAGTTGATGAACTCAATTTGTGAAGGGAGAAAGATGGCCGTTTCTCCGTCTATATTCAGTCTAGTGGAGATGGAGCACTTCTCCGTCTCCCTCCTCTCTCCATCTTTCAGACTCACCTGTGTGTGACCTGGGAGTCTGCAACTGGTCTCACTGCCTTTTGGGTGAATGGACGCCGCAGTTTGTACCAAGTGTACAGGAAAGGTTACTCAATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCTGATTCATATGTAGGTTCTTTTGATGTAGATCAGAGCTTTGAAGGAGAAATTACAGATCTGCAAATGTGGGACTATGTTCTGTCCGGCACTCAGATTAAAGCGGTGTACTCAAACCAGGAACCGCATGTGAACGGAAATGTCTTTAACTGGAACACCATCAAATATGATGCTGTTGGAAATATGATATTGGTTCATGATAACTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093671

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046699 True 708 unprocessed_pseudogene 0.47 2 38098896 38099675

Neighbor

gene id symbol gene type direction distance location
XLOC_023659 crp3 coding downstream 1591 38092608 ~ 38097305 (-)
XLOC_023658 BX001030.2 coding downstream 6308 38085317 ~ 38092588 (-)
XLOC_023657 crp2 coding downstream 13107 38082471 ~ 38085789 (-)
XLOC_023656 crp1 coding downstream 19635 38073223 ~ 38079261 (-)
XLOC_023655 si:ch211-248l17.3 coding downstream 86303 37999090 ~ 38012593 (-)
XLOC_023661 crp2 coding upstream 10124 38109799 ~ 38113208 (-)
XLOC_023662 si:ch211-234p6.9 coding upstream 21728 38121403 ~ 38122121 (-)
XLOC_023663 crp6 coding upstream 30929 38130604 ~ 38131381 (-)
XLOC_023664 crp7 coding upstream 37798 38137473 ~ 38192003 (-)
XLOC_023666 igic1s1 coding upstream 94461 38194136 ~ 38197040 (-)
XLOC_023665 dre-mir-735 misc upstream 78286 38177961 ~ 38178027 (-)
XLOC_023652 NA non-coding downstream 371947 37724974 ~ 37726949 (-)
XLOC_023651 NA non-coding downstream 390845 37705626 ~ 37708051 (-)
XLOC_023644 CU469584.1 non-coding downstream 694430 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 803795 37289468 ~ 37295101 (-)
XLOC_023667 NA non-coding upstream 98163 38197838 ~ 38215482 (-)
XLOC_023669 NA non-coding upstream 111428 38211103 ~ 38212927 (-)
XLOC_023670 NA non-coding upstream 141499 38241174 ~ 38252296 (-)
XLOC_023673 CU681836.1 non-coding upstream 296897 38396572 ~ 38397488 (-)
XLOC_023674 CU681836.2 non-coding upstream 347205 38446880 ~ 38447958 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00601730_00602242 NA coding CI01000329 null 601635 ~ 602242 (-)