XLOC_023671 (zgc:91999)


Basic Information

Item Value
gene id XLOC_023671
gene name zgc:91999
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38269088 ~ 38288883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046713
ATGGCGGATCCTCCAACAGGCCCACCTGAGGACATCAACAAAACCAGCTTCTGGATGCCAATAAATTATGTCCGGACAGTGCAGAGGACATCAGAGTCGTACCAGGCTTGTAAAGACATCATAGCGTGTATGAAGGACCGGGCTCATGTGGAGCGACAGTACGCCCGACAGCTGACCGAATGGAGCGACAAGTGGAAGTCCATCACTGAGACTCGGCCGCTGTACGGGTCTCTCTTGCGGGCCTGGCAGTGCTTTTTCTCCTCCACTGAGCGTCTGTCTGCGCTTCACACCTCAATCTCCCAGTCTCTGGTTTCAGAAGATGGAGAGCGCATCCACTCGTGGCAGAAAGAGACGTTCCCAAAGAAAATGTTCTGCGGATTCAGAGAGTCGTATGACCTCGAGACGGCTTTCTCACGCGCTCAGAAGCCCTGGGTGAAAAGATTGAAGAAGCTGGAAAAGGCTCGTGCGGTGTATCATAAGTCATGTCAGAGAGAGCAGAGCGCTCAGGAAAAAGAGAATCAAGCCAAACTCAAGGCCGACCTGAGCGAGAGCAAACTGTCCAAAATCCAGCAGACCAGAGAGAAAGCCACGCAGGAACGCACCAAGGCACGTGATCGCTATGAGAAGGTTCTAGAGGACGTCTCTGGCTTTGCACCGAGATACATGGAGGAAATGGAGTCTGTGTTCGACCAATCGCAGGAGGAGGAAAGGAAGAGGATCAGCTTCCTGAAGCAGGCCTTCCTGTCCATTCACAGACACCTCGACATTACCAACAACGAGAGtataaAGGCAGTCTACAGTGAGCTCCATCACACACTCATGTCCATCTCTGAAGCTGAAGATCTCCGCTGGTGGAAGAACAACCATGGGCCCGGGATGCCTACCGACTGGCCTAAAATAGAGgaATGG

Function

symbol description
zgc:91999 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane. Is expressed in cephalic musculature; myotome; notochord; pectoral fin musculature; and retina.

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0097320 plasma membrane tubulation biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0005768 endosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005543 phospholipid binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-241 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane. Is expressed in cephalic musculature; myotome; notochord; pectoral fin musculature; and retina.

Ensembl:

ensembl_id ENSDARG00000105001

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046713 True 909 mRNA 0.53 7 38269088 38288883

Neighbor

gene id symbol gene type direction distance location
XLOC_023670 NA coding downstream 16792 38241174 ~ 38252296 (-)
XLOC_023667 NA coding downstream 53606 38197838 ~ 38215482 (-)
XLOC_023669 NA coding downstream 56161 38211103 ~ 38212927 (-)
XLOC_023668 igl3v5 coding downstream 63952 38202298 ~ 38205136 (-)
XLOC_023666 igic1s1 coding downstream 72048 38194136 ~ 38197040 (-)
XLOC_023672 lrrc4bb coding upstream 80468 38369351 ~ 38384432 (-)
XLOC_023673 CU681836.1 coding upstream 107689 38396572 ~ 38397488 (-)
XLOC_023674 CU681836.2 coding upstream 157997 38446880 ~ 38447958 (-)
XLOC_023675 FP102794.1 coding upstream 235110 38523993 ~ 38524619 (-)
XLOC_023676 NA coding upstream 247536 38536419 ~ 38548037 (-)
XLOC_023665 dre-mir-735 misc downstream 91061 38177961 ~ 38178027 (-)
XLOC_023660 BX001030.1 non-coding downstream 169413 38098896 ~ 38099675 (-)
XLOC_023658 BX001030.2 non-coding downstream 176500 38085317 ~ 38092588 (-)
XLOC_023678 NA non-coding upstream 313134 38602017 ~ 38609746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00732153_00737116 NA coding CI01000329 null 732087 ~ 737116 (-)