XLOC_023678


Basic Information

Item Value
gene id XLOC_023678
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38602017 ~ 38609746 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046881
gtctatatttaggtgtaatttcagctgtTATTTGATCATAAATCTGCAGTTCTCTCTATCTGTTATTGTGCTGGTTGTTCATGTGCAGGTGttgagtgtctgtgtgtatggACGTACATGCGGATGTATGTATGTGCCTgcatgcatctgtgtgtgtgcgtgcaagaGCTCAATGGTCCTGGGACCGTGGTTGTCATGGTGTGAAGCTCCACCTTGGAAAGAGACGATCCACAAACAAAGTGATGCTCAGTGCAGCTGAAAGAGTCGAACCACTGGAGGACAAAATTACAAGACAGAGATCTAAAAACCAAAGGAAGGATGCTGAAGTGGACATTGCTgttggtgtgtgtgagtgtgtgtttgggtcAGAATCCGGTCAACACCGACACAGCAGAAGAAAATGAACTGACCTCTGATCAGCAGGACCAAGTCACTCTGAAACAAAGCTATGTTCACTTGATGAAGAGCAACAGTCGAGTGGGAGTCTTCATCGCTGCTGCTGTAGGAACTTTGACTCTGATGGCTGTGGTTTACTGCATCTACAACCAGTTCTACACCAAAAACATCTACTCACACACTCAGCTGCATGAATCAGACATCGCTCTGGATCTGAGCAGCTCGTCGTCCTCCGTGTTCTCTGGTTAtgtgatggagggatggatgcaGCAGCAGAGGATGGAGAAAGCTGGAGGGAGTTACGGCTCTCTGTCTGACACTCCGTCAATAAtcactcttcctcctcctctctctCCTCCTCAGAGAGCGTCTCCATTTCACTCGCTCTCGCTCTCCAGACCACCGCTGAGGACCATCTCCGCACAGGACCTGGAGAAGAGCTTCCTCTGAGActctctgagtgtgtgtgcgcgtgtgtgtgtctgtctgtctgtctgtgcgtgtatgtgtgtctgtctggCTGACTGTTTCTctgtctttatgtgtgtgtgagtgtgtgtttcttgCTCTTTGTTTCTATCTGTGCCTTATCAAtatttgagtgagtgagtgagtgagtgagtgggtgggtgggtggaagGGTGGAAGGGtgggtgggtgagtgagtgagtgagtgagtgagtgagtgtcttgagtgagtgagtgtttcTTGCTCTCTCTGTTTGTCTCTTCTGTGTGTGCCGTATTATTATTTGTGTGATAGAGTGAGTGTGTATCTGTCAAGTTTGTTTATCTGTCCgtccttttgtgtgtgtgtgtttgtgtgccagTCTGTCTCTTGCTCTCTtagtttctctctgtctctgtgtgtttccttattaatatttgtgtatgtgtgtgtcttttttttttttgtgcgcgcgcgtgtgtgagagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtatgtcTACATGTGTATGTCTGTAAgagtttctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcagtttctctgattgtgtgtgtatatatgcatatgtCTGTAAGcgtttttgtctctctctctctctctctctctctctctctctgtgtgtgtgtgtgcgtgtgcgcgtccgtgtgtgtatatgtacatgtacatttgtgtctgttgtttttgtgcgtgcgtgtgtgtgtgagtgagtgcatCTGTCAataagtgtttgtgtgcatttgtgcgAGTGAGTAAGTATCTGTCtagttttctgtgtgtgtgcatatacacttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctataattACGGGCTTCTTTTTATACTGTTtagttttttcctctctctccgtGTGtgtgagttgtgtgtgtgtgtgcgcgcgtgcgtgcgtgcgtgcgtgtgtgtgtgagttgtgTCTCTGTGGGTTTGATGGGGGTTGCAGTGAATCAGGGTCTCAGTTTACATGCAATAGTCACAGTATACGTGGCTCTAGTCTCTTACAGCAGTGCAGCATCAGTTCATGTGCTGAATATAGccttatttcaatatttaatgaTTATAAACCTCTCACTATTAGACATTTCATCATGCTGTATACAGTAACATCTCATCTGCTCAGCAGGGCTgcttttatttaaacaatcatacagtaagagcaataaataatatgaacatttaAAGACACTTTTCTGTTTGAATAGGCAGCTTTAGACAAAAATGTAGGAAATTTAGGTAATtatgtttctctggatttataaATGACATTCCTACAATTACAAGTAGATTTACAACCATTAAACCTTTTCGTTTATTTGatttcagtcttcagtgtcattaAGAAATCTCTCTAATGTGCTGATCTGATGTCTGAgaaacatttgtgtgtgtttgtgtttcatctATGACCCATTCCTGATTCTTTGAttaaatcaatattaataattgaaataaaacatgTAGGAAAatcattataaatgtctttaatgTAACCATggtgtctgtggggtcttaaaaagtcttaaatttcaaaaacctaaatattatttagcttacccaattcccctatagcgtatgtgtttggacttgtgggggaaacccatggggagaacatgcaaactccacacagaaatgccaactgacccagcagaggctcaaaccagcaaccttcttgctactcactgcgccactgtgctgcctgaTGCAATTCACCAAACaagaaattatcaggaaaatataattatacatatttatacataattatacatatataaataatagggTAAAATATCACATatgctttat

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046881 True 2789 lncRNA 0.43 4 38602017 38609746

Neighbor

gene id symbol gene type direction distance location
XLOC_023677 slc17a7b coding downstream 22951 38557989 ~ 38579066 (-)
XLOC_023676 NA coding downstream 53980 38536419 ~ 38548037 (-)
XLOC_023675 FP102794.1 coding downstream 77398 38523993 ~ 38524619 (-)
XLOC_023674 CU681836.2 coding downstream 154059 38446880 ~ 38447958 (-)
XLOC_023673 CU681836.1 coding downstream 204529 38396572 ~ 38397488 (-)
XLOC_023679 slc6a16b coding upstream 8756 38618502 ~ 38644937 (-)
XLOC_023680 si:ch1073-164k15.3 coding upstream 39139 38648885 ~ 38657683 (-)
XLOC_023681 NA coding upstream 55332 38665078 ~ 38671333 (-)
XLOC_023682 ntn2 coding upstream 116991 38726737 ~ 38787607 (-)
XLOC_023683 nog2 coding upstream 204988 38814734 ~ 38816725 (-)
XLOC_023665 dre-mir-735 misc downstream 423990 38177961 ~ 38178027 (-)
XLOC_023670 NA non-coding downstream 349721 38241174 ~ 38252296 (-)
XLOC_023684 NA non-coding upstream 307900 38917646 ~ 38933203 (-)
XLOC_023685 NA non-coding upstream 422430 39032176 ~ 39091863 (-)
XLOC_023687 NA non-coding upstream 540876 39150622 ~ 39155087 (-)
XLOC_023689 NA non-coding upstream 614966 39224712 ~ 39226058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G15890 NA non-coding CM030122.1 CM030122.1 31172185 ~ 31176602 (-)