XLOC_023679 (slc6a16b)


Basic Information

Item Value
gene id XLOC_023679
gene name slc6a16b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38618502 ~ 38644937 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046723
ATTGGAAGCGCGGCGTGTTTTAGTTCCGTGATTACAACAACCGCAAAGGAAACGTAAAAGGCGCGAAATGTTTTGCTTTGCTCCTTCGTATCTTCATCTTTTATTTCTGTAACGTTGATTAGTGTTTGTATGTTTTCGCTGGGGAATGTGTGAGGTAGTATTTTAAGAGGATTTGAGTCGCACATATACACTTGTGAGCCGGTGACAATACCCACGCCATAAGTCATAACACGTGCCCGTGCTTTTGAGAGACAGACACAACCGACAAGATGACGTCAGCAAAGCCCCCGTTACCTGCAGACGGCCAGCAGGATGAGGTTGAACTGCGATTGGGGCTCGAGCCAGAAGTCCCGTTGGAAACAGCCCGGGACGGTTGGGACAGTAAAGTAGAGTATTTCCTTGCTCAAGTCGGATTCAGTGTGGGATTGGGAAACGTTTGGAGGTTTCCGTATCTCTGCCACCAGAACGGAGGCGGAGCATTTATTTTGCTGTACGTGGTGTTGATGGCGCTGGTCGGTGTGCCGCTGTTTTTTCTGGAGCTTGCGGCTGGTCAGAGCATCAGACAGGGCAGCATTGGTGTCTGGAGGCACATTTCTCCAAAACTTGTTGGCATTGGCTACTCCAGCTGTGTGGTGTGTTTCTTTGTTGCTCTGTATTATAACGTCATCATCGGCTGGAGTATTTTTTATTTGGGGAACTCTTTCCAGTATCCTCTGCCATGGGAAAAATGTCCAACAGAAGGGAACAGCACAGTGAAGGAATGTGCTGCCAGCTCTCCTACAGCATATTTCTGGTACCGTAAAGCTCTGGATATCACCGATTCCATTGACGAAACGGGAGAGTTCAATTTCATACTCACTGGATGTCTGCTGGCCGCTTGGGTCATAGTGTGTCTGGCTATGTACAAGGGCATCAAGTCTTCCGGAAAGGTGATGTATTTCTCCTCCGTGTTTCCATACGTGGTTCTGCTGTGCTTTCTGATCAGAGGCGTGACGCTGGATGGAGCATCAGAGGGCATTAAATTCATGTTTTACCCCAGACTGGAGATCTGGGCTGATGTTCAGGTGTGGCGTCAGGCGGCGACGCAGGTCTTTTTCGCTCTGGGTTTGGGTTTTGGTTCTGTGATTGCGTACTCTTCCTATAACCCACGAAACAACAACTGCCATCGAGACGCGTTCACTGTGTCTGGAGTCAACTTCATGACGTCTGTTTTGGCCACGCTGGTGGTGTTTGCTGTGCTGGGCTTCAGGGCCAAAACCATCGCCACAGAGTGTGTCAAGCGTAATCTGAAGGCCCTGCTTAAGGTGACGTCCAGCGCTCCTCTACCTGTCCTTTCCATCAATGCTTCAGATGTAGAGAGCATCTCATTGGACGAGTATGCAAACTGGTACTCGACTCAAGGGATGGAGCTCAGTATCTCTGACTACAACATCACAGCCTGCAGCCTGGAGGATGAACTCAGACAGgGTGTTGAGGGAACAGGTTTAGCTTTTATAGCATTCACAGAAGCCATGACACTGTTTCCCGGCAGTCCGTTCTGGTCGGCGCTGTTCTTCCTCATGCTGCTCAATCTGGGCCTGTCCACCATGTTCGGCACCATGGCCGGAATCCTGACCCCGCTGACGGACACCTTCAAGACCCTGCGCAACCACAAGCTCATCTTTACAATCTGCAGCTGTACAGTGGGCTTTCTGATCGGTCTGGTGTTCACTCAGCGCTGTGGAAACTACTTTGTGACGATGTTTGATGATTATTCTGCCACTCTTCCTCTGATCATCGTTGTCATCTTTCAGACCATCAGTGTTTCATGGGTTTATGGAGCAGacagGTTTTTGGAGGACCTGAAACAGATGCTGAATCGGCCGATCCCCGTTATATACAAGTACTTGTGGAAATTTGTGTGTCCAATTGCTATGCTGGGACTTTTGGGGGCCAGTCTGCTAAAGATGATATTGAAGCGTCCCGAATACTCTGCGTGGAATAGAGAGAAGGCATCCAAAGAAGATCTTCCATATCCTGATTGGGCTCTTGCTGTTCTGATCATACTGATCATAATTGCATCACTTCCTGTTCCTATCGGATACATTCATTCCCTGCTCCTGGAGCGGCTCGGCCAATCACCAGCAGACACAGAGGCCAGATACACGCCATGTGCCACCACAGACGCAGATCTGACGCCTCTCAGCACATTACCACCATCGCGGGACGATCTCAATTCATCCCACCCTTTACTCGAGGGAAATCATAACTCGCATCTGCAAAACGGTCATATTGAAAGTGTGGAGTCGAGCGTTTTATGAGAGCATAGAGTTTACAGACATCAGCCATGGTTCTGTTCAAATGGGGACGTTTTTATTCACGTGCTTTTCCATTGACAACAATCATTTGATCTGTTCGTATGAACACGTGAGGATATATAAAGACTTCATTTATTGCCAGAAGAAAACTCATTGACTCACATTCACTTTCCTCACACGCTGAAATCTTTGAGGAGTCTGTGTGTTTCTCTTTCAATCAGATTATTAGGGCTGCGttatatatcgtttcagcatcgatatctcaACGTGCACCTCTGCAATCGTCACATCAGAGGATCTACAAAATCAACTTTGTATTTTAACCCATCACAGGATGATTAATTCATTCGACCCTTTACTTGAGGGAAATCTCACAACTACAAAACGATCATGTTAAGTGTTTTATGAGAGCACGACTGTCAGCAGAGTTTACAGACATCAGCGATGGATCTGTTTAAATAGGGCCCTTTTTTATTCACGTGCTTTGTTGTTGACaacaataatttttatttgttcgTA

Function

symbol description
slc6a16b Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A16 (solute carrier family 6 member 16).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-95 Predicted to enable symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A16 (solute carrier family 6 member 16).

Ensembl:

ensembl_id ENSDARG00000102377

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046723 True 2816 mRNA 0.47 12 38618502 38644937

Neighbor

gene id symbol gene type direction distance location
XLOC_023678 NA coding downstream 8756 38602017 ~ 38609746 (-)
XLOC_023677 slc17a7b coding downstream 39436 38557989 ~ 38579066 (-)
XLOC_023676 NA coding downstream 70465 38536419 ~ 38548037 (-)
XLOC_023675 FP102794.1 coding downstream 93883 38523993 ~ 38524619 (-)
XLOC_023674 CU681836.2 coding downstream 170544 38446880 ~ 38447958 (-)
XLOC_023680 si:ch1073-164k15.3 coding upstream 3948 38648885 ~ 38657683 (-)
XLOC_023681 NA coding upstream 20141 38665078 ~ 38671333 (-)
XLOC_023682 ntn2 coding upstream 81800 38726737 ~ 38787607 (-)
XLOC_023683 nog2 coding upstream 169797 38814734 ~ 38816725 (-)
XLOC_023684 NA coding upstream 272709 38917646 ~ 38933203 (-)
XLOC_023665 dre-mir-735 misc downstream 440475 38177961 ~ 38178027 (-)
XLOC_023673 CU681836.1 non-coding downstream 221014 38396572 ~ 38397488 (-)
XLOC_023685 NA non-coding upstream 387239 39032176 ~ 39091863 (-)
XLOC_023687 NA non-coding upstream 505685 39150622 ~ 39155087 (-)
XLOC_023689 NA non-coding upstream 579775 39224712 ~ 39226058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00853268_00862135 SLC6A16B coding CI01000329 null 851661 ~ 862135 (-)