XLOC_023680 (si:ch1073-164k15.3)


Basic Information

Item Value
gene id XLOC_023680
gene name si:ch1073-164k15.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38648885 ~ 38657683 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046724
TTTTGAAccaatctaaattaattaattaaagtctaTTAGAAAAAATTATGTTAGCTTTGTGCGCATGCGCGTTATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGATTTCTGTACATCCATCTGCACAGTACTGTACAACAAGTTTGCTTTGCTGAGTTCCTTGGTCAGgggtttaaatacattttctgtcCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCGATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTTTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGggCAACCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCACCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCGATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTGCTCAAAGGCTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTGATAAATGCTCAACAACCAAATGTATATCATATACAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTtttaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagcatgtGCATTCTATAAACTTTGTATTTATTCCATTTCATACAACTTGTAGTTGCTCAATATGTTAAtgagttatttttttaagttaattagtTGATTATTTTGTGTATTGGGGTGTGTGTGTCATAAGGAATGCAGTTTGCTCTAAGACTTCATACAGTTTTCTTTTATGTgttggtttaaattaaatgtgctgtacaaactgtttattgttttatggtGTGCTGCTAAAGCATTTATTGGCAgtgatttatgttttgttaaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaacaAA
>TCONS_00046725
ATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGTTTTACAGAATCCAGTCAGATTGAAGCAAGACGCCAGAGCCGGATTTCTGTACATCCATCTGCACAGTACTGTACAACAAGTTTGCTTTGCTGAGTTCCTTGGTCAGgggtttaaatacattttctgtcCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtaagtaactgCAAAACATTTATCACTACACATTACAGTAAACAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTtcatggttccaaacctttgagtttcttttatctgt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131119-59 No description available

Ensembl:

ensembl_id ENSDARG00000087102

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046724 False 1162 mRNA 0.36 4 38648885 38657683
TCONS_00046725 True 364 lncRNA 0.38 2 38656097 38657610

Neighbor

gene id symbol gene type direction distance location
XLOC_023679 slc6a16b coding downstream 3948 38618502 ~ 38644937 (-)
XLOC_023678 NA coding downstream 39139 38602017 ~ 38609746 (-)
XLOC_023677 slc17a7b coding downstream 69819 38557989 ~ 38579066 (-)
XLOC_023676 NA coding downstream 100848 38536419 ~ 38548037 (-)
XLOC_023675 FP102794.1 coding downstream 124266 38523993 ~ 38524619 (-)
XLOC_023681 NA coding upstream 7395 38665078 ~ 38671333 (-)
XLOC_023682 ntn2 coding upstream 69054 38726737 ~ 38787607 (-)
XLOC_023683 nog2 coding upstream 157051 38814734 ~ 38816725 (-)
XLOC_023684 NA coding upstream 259963 38917646 ~ 38933203 (-)
XLOC_023685 NA coding upstream 374493 39032176 ~ 39091863 (-)
XLOC_023665 dre-mir-735 misc downstream 470858 38177961 ~ 38178027 (-)
XLOC_023674 CU681836.2 non-coding downstream 200927 38446880 ~ 38447958 (-)
XLOC_023673 CU681836.1 non-coding downstream 251397 38396572 ~ 38397488 (-)
XLOC_023687 NA non-coding upstream 492939 39150622 ~ 39155087 (-)
XLOC_023689 NA non-coding upstream 567029 39224712 ~ 39226058 (-)

Expression


Co-expression Network