XLOC_023681


Basic Information

Item Value
gene id XLOC_023681
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38665078 ~ 38671333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046726
cacacacacacacacacacacacactcactcattcataaaAAATTCTCACTCCAGAAAACATGTTTGGCATTCAGTTTGACATTGAGATGCCTTGACATTTAACTTCACTTTGTCTCTCCCACTATCAACCCGCACACAAAGaagcacacacagacatacacatccAGTTTATCTTATTTACTAAATCTAAAAAGCACATTCAGAACAGATGAAGAACACACTGTACCTTACTCCAATCCTAGTCGCCTTGTAAGTGTCCTAAAGAACAGCTGAAGTCAAGTAAATCTCTCTGTCGTTCCCTCtgcaaatctctctctctttctctccctccctGTACTCTCAGTCACGCCTTCACAAGTTATGTAGAAACTGGTCAAACCGGTTCACCTGCACACTAACAGGTTCTAGACTGTGGAAATCACAACATTAGCCGAGGAGAAGAGATCAGTACCTGCTGGATGGGATTGTGTAATGCGAAACAGCTCGCTTGATGTCATCTCTAATGCGCTCGGCCTGAAATGAGCAAACAGAGGGATGTCACTGAGGAGGGGGCGGGGCTTAAGCAAAACAGTATCACCTGCATTCATAATCAAACGGGGTTTTTACTTTGATGGATTCACAGGTGAAGAAATACACGCTCGGTTTCTTCTGGGTGCAGCTCTGAGAAACCAGAAGGAGAAGAGCTGGAtgaggatgaagatgaggatgGAGAGATGGGGTGTTTATGCATTCACAGCGGAGGAGAGATGACACCGACAACTCTTCCAGCTCCTTATCAATGGATGACTCTATTGGTCCGGACCTCAAGAAGGACCTCAGCCCTGGACACCCGATTAGAATCAATGAGAAGAGAAATCCATGAAAGAGCCTCTTCAACAGTGTCCACACCATCATCTCCAAGAGACAAACTCACCAGCTTCTGTATTATAAACAGAGGAAGACAGGAACACTTTACAATCAGGTCCCATTATTTAGGTTGGCCATAAAAAAGTACATCCAAgaggttgttatcgcagaataaagcctgacagttTTATCGGCTTATCAATGTGAAGCTGAGGGCTATTGTGTAAGACTGAGGGGCTTTATTCTGCGAAAACAACCCTTCTGGATGGACTTTATTctacttattacatggctacttgccacaaaacattgttctaagCTGTAAtcgtttattaattctttaattacatgcaaagctgacagaaaagaaaacagctgatggagtatacactaacctgcacattattcagacacacgatagcgccaaacagacaaaaacgcAAATCTGACAGAagctaaaacagctgatggagtatacactaacctgcacattattcagacacaagatggcgccaaacagccatacacaaagctgacaaaaatgaaaacagctgatggagtatacacttacctgagcattattcagacacatgatagcgccaaacagacaaaaacgcAAATCTGACAGAagctaaaacagctgatggagtatacactaacctgcacattattcagacacaagatggcgccaaacagccaaacacaaagctgacaaaaatgaaaacagctgatggagtatacactaacctgagcattattcagacacatgatagcgccaaacagacaaaaacgcAAATCTGACAGAagctaaaacagctgatggagtatacactaacctgcacattattcagacacaagatggcgccaaactttcaaaaacacaaaactgacacaaactaaaacagctgatggagtatacactaacctgcgcattattcagacacaagatggaggtTTGACAGTAAAAATGTAACATGAACAGCGTTAATTTAACTcagtaatattaaatatttttccagacccAAAACTGGATTTACAGTACAATGAAGAAAAGTGTATGGGGCAGGACTTGATTTTAAGTGGTTGTGACTGAATTATGCACAAAAATAGTCAATTCTGAATTCTTGCTGACTTAAAATAGCAGGTACACACACCTCAGCACACCCTGTTTCTCCTACAAAAACATAAAGCACTTACTGTCCTCACACCCATATGAAAGAGTCATCTTTAAGTGCATGTATGAACAGCCTCTTAATCTACAGGGCAGGATTCCAGACTCACCTTTATGGAGAACTTATAGGGAAATAAACTTGCGCTGACTTGTTTACACCTCttggtttattttacaaatcTAGAAAAGTCTGGATAGAGGTAAATGATAGTAGTAAAAGGACCTGTGCTTGTGATTTTATAAGCTGTGTTTACAACTGAAAATGGTCataatttaatgtgttttgttgtttgtttgcaaTCTTTTGATAATGGTTGTTGAAAttgttgaaaattatttattacaaaattatgaaccaaataatagtaataataaaaaaaaaaataataatagtaataataattacaaaatgaCATTGTCAATGCATAATACAGGGGTTGATTTGGACTATTTTGTTGTCTGTATGTGAAACTTTTCTAGTGCATTGTTGTGTAAACAGATTTTAAGTTTAGTAATAACTACTACAGTTGCTTGTACTTTAAATAAGTGAATAGAACAAACTAatgttactgtaaatattagGGGGTATTTTAATGACACCACTGTaagtttaaaactgaaaataaaatacatattattttattaatttacactTTTGCGGCCTAAAATAAGAAGCTAACTTGTTTTTAAGCGAcaggtttttaaaataatactctCTAGAAATGCTGTTTTTAATGCAAATGTTGGGCCAAGTTTTGATAAAGCCAacattggattttattttttcaattcaatttaaattatatttttttaaaccaatgaTTGGGTTTTTGTTAAAGCAACCCAGCATTTGTTTAGAACTGTCATTGTCTTCATGTACACTACAAAAACGCAGTTTTGTGAAAATATTGATGTTTTATGTTAATCcaaaatattgtttataaaatatatagtttttataaaGTTGCAAAACATTTTTGTC

Function

GO:

id name namespace
GO:0043297 apical junction assembly biological_process
GO:0015849 organic acid transport biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0015711 organic anion transport biological_process
GO:0120192 tight junction assembly biological_process
GO:0120193 tight junction organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046726 True 3000 lncRNA 0.37 2 38665078 38671333

Neighbor

gene id symbol gene type direction distance location
XLOC_023680 si:ch1073-164k15.3 coding downstream 7395 38648885 ~ 38657683 (-)
XLOC_023679 slc6a16b coding downstream 20141 38618502 ~ 38644937 (-)
XLOC_023678 NA coding downstream 55332 38602017 ~ 38609746 (-)
XLOC_023677 slc17a7b coding downstream 86012 38557989 ~ 38579066 (-)
XLOC_023676 NA coding downstream 117041 38536419 ~ 38548037 (-)
XLOC_023682 ntn2 coding upstream 55404 38726737 ~ 38787607 (-)
XLOC_023683 nog2 coding upstream 143401 38814734 ~ 38816725 (-)
XLOC_023684 NA coding upstream 246313 38917646 ~ 38933203 (-)
XLOC_023685 NA coding upstream 360843 39032176 ~ 39091863 (-)
XLOC_023686 CU929145.1 coding upstream 449392 39120725 ~ 39121900 (-)
XLOC_023665 dre-mir-735 misc downstream 487051 38177961 ~ 38178027 (-)
XLOC_023675 FP102794.1 non-coding downstream 140459 38523993 ~ 38524619 (-)
XLOC_023674 CU681836.2 non-coding downstream 217120 38446880 ~ 38447958 (-)
XLOC_023673 CU681836.1 non-coding downstream 267590 38396572 ~ 38397488 (-)
XLOC_023687 NA non-coding upstream 479289 39150622 ~ 39155087 (-)
XLOC_023689 NA non-coding upstream 553379 39224712 ~ 39226058 (-)
XLOC_023698 CT573356.1 non-coding upstream 1055513 39726846 ~ 39726978 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location