XLOC_023683 (nog2)


Basic Information

Item Value
gene id XLOC_023683
gene name nog2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38814734 ~ 38816725 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046729
CGGATTTGTGACACGGCCGGGGATTTGAAAGCACCGCAGCCGCGTCTGGAGAACATGCAGCAGATATTCTTGGGGACGCTTGACTTGTAGAGGAGCTGACAGGAGCCTGATATTAAACCGGACTGACAGCGAACATGTTCTAGGCGCTTCTGAAGTTCCGATTGCGCGCGGAGTTCAGCAGGATCTGCCCGCGCTGTGGAGAGACTGAGCGGCTCACGTCCCGGGTCAGCAGCGCCGGTTCGGCGGGACGCGCTGGAGCCTCATTGCTCAGCagagtgagaaagagaaagagagagagcgtaAAAATAACATTGGCTAAGACGCGCTCCATTCCACGGGCGCGCTGACATTTCAAACGCCAGTTTGGGTGGCACCCGGCAACATAAACCCGAGCAGGCTGTAGAAACGGTGCCATCCCATCCGGACTGGTTACCATGGCAACCCGGCGCTAAAAGAAAATCTGATTATTAAATCTGAGGATACGCTTCTGACCCCTTTGCACGCCTCACCTGAGCGAGTATCcctgaataaaagaaaaagaaaagcagctCATGTCCCATGTCATACCCGGCCACGCGGCCGTCTATTAAAAGATCTCGCTCGTGCTGTCGCTCGGACTATTTATGCACGTGGGCGCAGTGAGGGCCAACTCCACTCCGTAGACAGACAGAAGACGAGTCATGGGCAGCATCACCCGCGCGCTGCCGCTGCTGCTCCTGCTGCTCCTGTGCGCGCACGGCACCGCATCCCAGCACCACCTGCGCCTCAGGCCCTTGCCCAGCGAAGGTCTACCCGTCCCAGACCTCATCGAGAACCCCGACCCGGAGCACGACCCACGCGAGCAGGACCTCTCGGAGAAGACCCTGCTCAAAAAGCTGGGCAGCAACTTCGACGCCAACTTCATGTCCATCCACCTGCCCGCGCAGCTGAACGCCAGCGCGCCGCCGGAGCTGCCGCGCCTCCCCATGCCCGCGGAGCTCAAGAAGCTGGACCTCACGGAGACGCCGTACGGCAGGCGCGTCAAGGTGGGCAAGAAGGCGCGGCGGAAGTTCCTGCAGTGGCTGTGGATGTACACGCACTGCCCGGTGCTTTACACCTGGAAGGACCTGGGCTTGCGCTTCTGGCCGCGCTACATCAAGGAGGGGAACTGCTTCAGCGAGCGCTCGTGCTCCTTTCCCGAAGGCATGTCCTGCAAACCGGTCAAGGCTGTGACCAAGACCTTCCTGCGGTGGTACTGCCAGGGCTTCATGCGGCAGAAATACTGCACGTGGATACAGGTGCAGTATCCCATCATCTCCCAGTGCAAGTGCTCGTGCTGAGCTGCGCGTGCGCGAGAGGGTTTATCCAATATGAATGATTGCACTGTTTACCCACGGACAGAGGGATGTGTGGCGCCACATAgcgattctatttttttatatatatatatatatagctttttaattcaagatatatgacatatatgtacatatttaagtCGAAGAAAGAAGAATGCAGCTATTTTTGTTAAAGGATCAGGACCATATTCTCACGAGGAGCACTTCAGCTCGTGGTTATTTTTATGAAGTTATTGGGAAGACGAAAGAGAGAACTTCACTTTCCTCCTGTCGAACTCTATTTATAGAGACTGAAGAACACTGCGGGGATGCCTAGACGTTTTGtacaaatattaatatcaattatTGTTGAAAAAAAGAGGCTGGGCTGAAAGTTATACAGTGGAGtcggcttttattttttttcttttggaaatcATATAGTATTTTAGTAAAAAGACACACATGTGTAcggtttatttattgttttaacgGTTGTGAGTATAGATAAAGAGAATAGAATATACCAGAAATTCTACTTGAAAAgttctaaagatgaatttaagagaatattaatattattaataataataataataaacatgtcaGTGTAAAATGCCATGGTTTTAGCAATAAAATCTATTAAACGTGGACTGAGTGTGAAGGATCTGAGAAA

Function

symbol description
nog2 Acts upstream of or within negative regulation of BMP signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; notochord; segmental plate; spinal cord neural tube; and tail bud.

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991206-14 Acts upstream of or within negative regulation of BMP signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including brain; notochord; segmental plate; spinal cord neural tube; and tail bud.

Ensembl:

ensembl_id ENSDARG00000043066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046729 True 1992 mRNA 0.51 1 38814734 38816725

Neighbor

gene id symbol gene type direction distance location
XLOC_023682 ntn2 coding downstream 27127 38726737 ~ 38787607 (-)
XLOC_023681 NA coding downstream 143401 38665078 ~ 38671333 (-)
XLOC_023680 si:ch1073-164k15.3 coding downstream 157051 38648885 ~ 38657683 (-)
XLOC_023679 slc6a16b coding downstream 169797 38618502 ~ 38644937 (-)
XLOC_023678 NA coding downstream 204988 38602017 ~ 38609746 (-)
XLOC_023684 NA coding upstream 100921 38917646 ~ 38933203 (-)
XLOC_023685 NA coding upstream 215451 39032176 ~ 39091863 (-)
XLOC_023686 CU929145.1 coding upstream 304000 39120725 ~ 39121900 (-)
XLOC_023687 NA coding upstream 333897 39150622 ~ 39155087 (-)
XLOC_023688 nubp2 coding upstream 361623 39178348 ~ 39186185 (-)
XLOC_023665 dre-mir-735 misc downstream 636707 38177961 ~ 38178027 (-)
XLOC_023676 NA non-coding downstream 266697 38536419 ~ 38548037 (-)
XLOC_023675 FP102794.1 non-coding downstream 290115 38523993 ~ 38524619 (-)
XLOC_023674 CU681836.2 non-coding downstream 366776 38446880 ~ 38447958 (-)
XLOC_023689 NA non-coding upstream 407987 39224712 ~ 39226058 (-)
XLOC_023698 CT573356.1 non-coding upstream 910121 39726846 ~ 39726978 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location