XLOC_023692 (cox6b1)


Basic Information

Item Value
gene id XLOC_023692
gene name cox6b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 39606053 ~ 39610585 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046736
ATATCGCATCTGTCGTTTCAATGTGACCTGAGTCCGCCATACCGTGTGTACAGGACTGCACGCCAGCGCTCAAGTGCACTtactagcacacacacactcggcaAGTGGATGAGGATTGTGTGTCACTGAACTAAAGTCACTCAGATCAGCAGCCGCCTCACATCACACAGGGAGCGTCATGGCAGAGGATATCAAGCAGAAGCTGGAGAACTACCGCACGGCGCCCTTCGATGCCCGCTTCCCGAACCAGAACCAGACGAGAAACTGCTGGCAGAATTACCTGGATTATCACCGATGCCAAAAAGCTCTGGATGCCAAAGGTGTGGATACAGCCCCATGTGACTGGTACAAGCGGGTCTACAAATCTCTCTGCCCTCTGTCCTGGATCGAGAAATGGGACACCCAGAGGGAAGAAGGAAATTTCCCAGGGAAGATCTGAAGGTGAAAGCGCATCAGGGGAACCGAAACGCATCTGTCTGTGGACACGTCTCTCTCAAACTGAACGGGGCCTTATTAATGTTGGTTCATAAATGCACCTGTCAGTCTGGAGGACGAGGCCGATTGTTAACGTCATTCCTTATTTAAATGAAAGTGTTGCAGAATCTGCATTAAAATCTCAGGCACTGAAATGTT

Function

symbol description
cox6b1 Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in several structures, including gill; heart; liver; pronephros; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1).

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-448 Predicted to be part of respiratory chain complex IV. Predicted to be active in mitochondrion. Is expressed in several structures, including gill; heart; liver; pronephros; and skeletal muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human COX6B1 (cytochrome c oxidase subunit 6B1).

Ensembl:

ensembl_id ENSDARG00000045230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046736 True 633 mRNA 0.50 4 39606053 39610585

Neighbor

gene id symbol gene type direction distance location
XLOC_023691 lyrm1 coding downstream 87423 39509721 ~ 39518630 (-)
XLOC_023690 kcnj12a coding downstream 251224 39353393 ~ 39354829 (-)
XLOC_023689 NA coding downstream 379995 39224712 ~ 39226058 (-)
XLOC_023688 nubp2 coding downstream 419868 39178348 ~ 39186185 (-)
XLOC_023687 NA coding downstream 450966 39150622 ~ 39155087 (-)
XLOC_023693 fam234a coding upstream 9876 39620461 ~ 39637418 (-)
XLOC_023694 CT573356.4 coding upstream 72683 39683268 ~ 39683582 (-)
XLOC_023695 si:dkey-234i14.13 coding upstream 73549 39684134 ~ 39686707 (-)
XLOC_023696 CT573356.3 coding upstream 80022 39690607 ~ 39698825 (-)
XLOC_023697 igl3v2 coding upstream 89967 39700552 ~ 39701027 (-)
XLOC_023665 dre-mir-735 misc downstream 1428026 38177961 ~ 38178027 (-)
XLOC_023685 NA non-coding downstream 514190 39032176 ~ 39091863 (-)
XLOC_023684 NA non-coding downstream 672850 38917646 ~ 38933203 (-)
XLOC_023681 NA non-coding downstream 934720 38665078 ~ 38671333 (-)
XLOC_023698 CT573356.1 non-coding upstream 116261 39726846 ~ 39726978 (-)
XLOC_023708 NA non-coding upstream 1200946 40811531 ~ 40814280 (-)
XLOC_023711 NA non-coding upstream 1263356 40873941 ~ 40875493 (-)
XLOC_023713 NA non-coding upstream 1297940 40908525 ~ 40910541 (-)
XLOC_023714 NA non-coding upstream 1522680 41133265 ~ 41152077 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G473286 NA non-coding CI01000329 null 1350726 ~ 1367059 (-)