LOC110525435 (LOC106585385)


Basic Information

Item Value
gene id LOC110525435
gene name LOC106585385
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20713704 ~ 20726970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605540.2
AGGCTTATCAGCTGCTGTCCTGGGTCCCATGGTGTGCACATCACATCGAGGCCCATCCAAGTTTTCCCTGCACTCTCCTGCCAAGTTGATATCATATAGCACCTGactctgtctatccctgtctgaaCAAGGTCTCAGAACAAGGTCTCTTGTTAAATCCAAAACAAAACCATGCTAAACTGGGTCACTTTGAGGCTGTTGCTGttggagagatacacacagactCAATTACAAGATGTCTGACCAACAGGATTCTGTTCTCACCAATGGGGTTCCTGACATAGAAAAGAGTTCTGAGAATTCTAGTGTGATTGGCATTCCTCTTGGAGAAACCAAACCGTTAGTACCAGTTGCCAAACTTCAGCAGAAGGAAATCTACTGCAGTCCCCTCGTCAACGGAGGAGTAGTAGACCATCCACAACCAAACTCAGAGTCAGAGTCTGATGGAGAAGACAAAGACAGTCAGGAGTCAGTTGCTGTAGAACCTGCAGTGATAACCCCATCAAGAATACCTGAAGCACCAGCCAAATTACCCAGATCCCCTGGACAAGCGGGACCTCAAGGGGATCCTCTCTCAGGTGCCTCGGTGCCCCTGAAGCTGTCGGATGTGTCCCTGGCCACAGCAGAGCAGCTCTGGTGCACCTCCAGGGACCAGGCGGTTAAGCTGAGGATGGCTGAGACGGGGCCGGGATCCGAGGCCCCCATGACTATCCACCAGATGTTCTTAAAGACGGTGAATATCTATGGAGACCTGCCTGCGGTGGCGTCTAAGAAAGAGGGGCAGTGGGTAACCCTGACCTGGAGGGAGTACTACCAGCAGTGCAGAGCGGCGGCCAAGAGCTTCCTTAAGTTGGGTCTGGAGCGTTACCATGGCGTCGGTATTCTGGGCTTTAACTCTCCTGAGTGGTTCATCTCAGACATCGGCTGTATCCTGGCTGGGGGTTTTGCTGCAGGCATATACACCACTAACTCCCCCGAGGCGTGTCAGTATGTGGCAGACAACTGTGAGGCCAACGTCCTGGTGGTGGAGAACCACAAACAGCTCCTCAAAATCCTCCAGATTAAGGAACAGCTTCCACACTTGAAAGCTATTGTTCAGTACAAGGATGAACTTCAACAGAAGCTGCCAAACCTGTACACTTGGGCTGAGTTTATGAAGCTGGGTGAGGAGGTGTCTGATGAACGGCTAGATGCTGTGGTGGACAGTCAGAGGGCTAACCAGTGTTGTACGCTCATCTACACCTCTGGAACCACAGGCAACCCCAAAGGGGTCATGCTAAGCCATGACAATATCACCTGGACTTCAAATGCGGTCGGAGCCATGACAAGTCTGCAACATGGTGTGGAGTGCGTGGTGAGCTACCTGCCCCTGAGCCATGTAGCTGCCCAGATCAACGACATGTGGATCTGCATGAGATTTGCAGGGGCAACGTATTTCGCAGACCCAGACGCCCTGAAGGGCTCTTTGGGGACTACTCTGAAAGAGGTGCGCCCCACAAGTTTCCTGGGAGTTCCCCGTGTGTGGGAGAAGATGCAGGAGAAGATGAAAGCCATCGGAGCCAAATCCTCTGGTATGAAGAAAAGAGTGGCTAACTGGGCCAAATCCATCGGATTGCAAGCCAGCTACAGTGCCATGAATGGTGAGAACCTGGTGCCCTGGGGCTTCATGCTGGCAAACAACCTGGTGTTTAAGAAAGTTCGCTGGGCCTTGGGTCTGGACCGCTGCAAGAACTGCTTAACGGGGGCCGCACCCATCACTAAGGAGACTCTGGAGTACTTCATGAGCCTTAGCCTCCCGCTGTATGAGCTGTATGGGATGAGTGAAAGCACCGGCCCTCACACCATCTCCTGGGAGAATAACTTCAAGATCATGAGCTGTGGAAAGGTGGTGGTTGGCTGCCAGACCAAGTTGGACAAGCCAGACGAGGATGGGAATGGTGAGATCTGTTTCTGGGGGCGTCATGTGTTCATGGGCTACCTGAATGAGCCAGAGAAGACTGAGGAGGCCCTGGACCAGGAGGGCTGGCTGCACTCTGGAGACCTGGGCAAGCATGACAAGGACAACTTCCTATTCATCACAGGGAGGATAAAGGAGCTGATCATAACAGCAGGAGGAGAGAACATCCCACCTGTACCCATTGAGGATGCAGTGAAAGCAGAGATTGCCATCATCAGCAACGCCATGTTGCTCGGAGACAAGATGAAATTCCTCTCCATGATGCTCACGCTCAAATGTATAGTTGACGACAATGGCGAGCCGACGGACGAGCTGACCCCAGAGGCTGTGGCGTTCTGCCATCAGCGTGGCATAACGGCAACCAAGGCCTCTGAGATCATAGCCAGTAAGGAACCAGCTATTTATAAGGCCATCCAGGAGGGCATAGAGCATGTCAATGCTAAGGCCACCTCCAATGCCCAGAGGGTCCAGAAGTGGGTCATTTTGGACAGAGATTTCTCTATATCTGGGGGAGAACTGGGACCTACCATGAAGCTAAAGAGGGGGGTTGTTGTCAAAAAGTTCCAAGAGAAAATCAACAAGATGTATGGAATGGCACAAGAATAATAGAGGAACTGAACATGGACTAGAGAACACTTGAGGACTGTAGTTATTGGACTATTAAATGCATCTGTAGACATTTGAGTGTGTCTTGTTTTCCAGTACCTAGAGAATTATCCCATTGGTATCTGCTCCATATCAATATTTAAGCTGTTTTAATGTACATAAGATTTCACAGCATTGATATTTGCACTTTTTTTGTAAATAAACCTTATATTCATCATCAATGCTATACTGTACCCATTTCAAGTAAAGGAAAATGCCTCAAAACAAAATCATTAATGTAATGTTTGTTAAGTGATTCTATCATTATTTGGatggtatactgtagtattttcattttattttagcCAATTATATTCCGTGTACATTATAATACatattaaaatgtttattttcatgGGTTAAATGAACATGATCAATAAAAGCAAACAAACTGTTCtggaccccccccaaaaaa
>XM_021605539.2
CAGGCTTATCAGCTGCTGTCCTGGGTCCCATGGTGTGCACATCACATCGAGGCCCATCCAAGTTTTCCCTGCACTCTCCTGCCAAGTTGATATCATATAGCACCTGactctgtctatccctgtctgaaCAAGGTCTCAGAACAAGCAATTACAAGATGTCTGACCAACAGGATTCTGTTCTCACCAATGGGGTTCCTGACATAGAAAAGAGTTCTGAGAATTCTAGTGTGATTGGCATTCCTCTTGGAGAAACCAAACCGTTAGTACCAGTTGCCAAACTTCAGCAGAAGGAAATCTACTGCAGTCCCCTCGTCAACGGAGGAGTAGTAGACCATCCACAACCAAACTCAGAGTCAGAGTCTGATGGAGAAGACAAAGACAGTCAGGAGTCAGTTGCTGTAGAACCTGCAGTGATAACCCCATCAAGAATACCTGAAGCACCAGCCAAATTACCCAGATCCCCTGGACAAGCGGGACCTCAAGGGGATCCTCTCTCAGGTGCCTCGGTGCCCCTGAAGCTGTCGGATGTGTCCCTGGCCACAGCAGAGCAGCTCTGGTGCACCTCCAGGGACCAGGCGGTTAAGCTGAGGATGGCTGAGACGGGGCCGGGATCCGAGGCCCCCATGACTATCCACCAGATGTTCTTAAAGACGGTGAATATCTATGGAGACCTGCCTGCGGTGGCGTCTAAGAAAGAGGGGCAGTGGGTAACCCTGACCTGGAGGGAGTACTACCAGCAGTGCAGAGCGGCGGCCAAGAGCTTCCTTAAGTTGGGTCTGGAGCGTTACCATGGCGTCGGTATTCTGGGCTTTAACTCTCCTGAGTGGTTCATCTCAGACATCGGCTGTATCCTGGCTGGGGGTTTTGCTGCAGGCATATACACCACTAACTCCCCCGAGGCGTGTCAGTATGTGGCAGACAACTGTGAGGCCAACGTCCTGGTGGTGGAGAACCACAAACAGCTCCTCAAAATCCTCCAGATTAAGGAACAGCTTCCACACTTGAAAGCTATTGTTCAGTACAAGGATGAACTTCAACAGAAGCTGCCAAACCTGTACACTTGGGCTGAGTTTATGAAGCTGGGTGAGGAGGTGTCTGATGAACGGCTAGATGCTGTGGTGGACAGTCAGAGGGCTAACCAGTGTTGTACGCTCATCTACACCTCTGGAACCACAGGCAACCCCAAAGGGGTCATGCTAAGCCATGACAATATCACCTGGACTTCAAATGCGGTCGGAGCCATGACAAGTCTGCAACATGGTGTGGAGTGCGTGGTGAGCTACCTGCCCCTGAGCCATGTAGCTGCCCAGATCAACGACATGTGGATCTGCATGAGATTTGCAGGGGCAACGTATTTCGCAGACCCAGACGCCCTGAAGGGCTCTTTGGGGACTACTCTGAAAGAGGTGCGCCCCACAAGTTTCCTGGGAGTTCCCCGTGTGTGGGAGAAGATGCAGGAGAAGATGAAAGCCATCGGAGCCAAATCCTCTGGTATGAAGAAAAGAGTGGCTAACTGGGCCAAATCCATCGGATTGCAAGCCAGCTACAGTGCCATGAATGGTGAGAACCTGGTGCCCTGGGGCTTCATGCTGGCAAACAACCTGGTGTTTAAGAAAGTTCGCTGGGCCTTGGGTCTGGACCGCTGCAAGAACTGCTTAACGGGGGCCGCACCCATCACTAAGGAGACTCTGGAGTACTTCATGAGCCTTAGCCTCCCGCTGTATGAGCTGTATGGGATGAGTGAAAGCACCGGCCCTCACACCATCTCCTGGGAGAATAACTTCAAGATCATGAGCTGTGGAAAGGTGGTGGTTGGCTGCCAGACCAAGTTGGACAAGCCAGACGAGGATGGGAATGGTGAGATCTGTTTCTGGGGGCGTCATGTGTTCATGGGCTACCTGAATGAGCCAGAGAAGACTGAGGAGGCCCTGGACCAGGAGGGCTGGCTGCACTCTGGAGACCTGGGCAAGCATGACAAGGACAACTTCCTATTCATCACAGGGAGGATAAAGGAGCTGATCATAACAGCAGGAGGAGAGAACATCCCACCTGTACCCATTGAGGATGCAGTGAAAGCAGAGATTGCCATCATCAGCAACGCCATGTTGCTCGGAGACAAGATGAAATTCCTCTCCATGATGCTCACGCTCAAATGTATAGTTGACGACAATGGCGAGCCGACGGACGAGCTGACCCCAGAGGCTGTGGCGTTCTGCCATCAGCGTGGCATAACGGCAACCAAGGCCTCTGAGATCATAGCCAGTAAGGAACCAGCTATTTATAAGGCCATCCAGGAGGGCATAGAGCATGTCAATGCTAAGGCCACCTCCAATGCCCAGAGGGTCCAGAAGTGGGTCATTTTGGACAGAGATTTCTCTATATCTGGGGGAGAACTGGGACCTACCATGAAGCTAAAGAGGGGGGTTGTTGTCAAAAAGTTCCAAGAGAAAATCAACAAGATGTATGGAATGGCACAAGAATAATAGAGGAACTGAACATGGACTAGAGAACACTTGAGGACTGTAGTTATTGGACTATTAAATGCATCTGTAGACATTTGAGTGTGTCTTGTTTTCCAGTACCTAGAGAATTATCCCATTGGTATCTGCTCCATATCAATATTTAAGCTGTTTTAATGTACATAAGATTTCACAGCATTGATATTTGCACTTTTTTTGTAAATAAACCTTATATTCATCATCAATGCTATACTGTACCCATTTCAAGTAAAGGAAAATGCCTCAAAACAAAATCATTAATGTAATGTTTGTTAAGTGATTCTATCATTATTTGGatggtatactgtagtattttcattttattttagcCAATTATATTCCGTGTACATTATAATACatattaaaatgtttattttcatgGGTTAAATGAACATGATCAATAAAAGCAAACAAACTGTTCtggaccccccccaaaaaa

Function

NR:

description
long-chain-fatty-acid--CoA ligase ACSBG2-like

GO: NA

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605540.2 False 3017 mRNA 0.49 16 20713704 20726969
XM_021605539.2 True 2937 mRNA 0.49 15 20713704 20726970

Neighbor

gene id symbol gene type direction distance location
LOC110525438 LOC106585383 coding downstream 14192 20688144 ~ 20699512 (-)
LOC110525114 LOC106585382 coding downstream 43027 20656495 ~ 20670677 (-)
zgc:158260 LOC106585379 coding downstream 101103 20603073 ~ 20612601 (-)
LOC110525433 ccng2 coding downstream 122116 20584162 ~ 20591588 (-)
LOC110525430 LOC106585377 coding downstream 130699 20566415 ~ 20583005 (-)
hint2 hint2 coding upstream 1029 20727999 ~ 20730282 (-)
malt1 LOC106585388 coding upstream 18382 20745352 ~ 20755400 (-)
LOC110525443 LOC106585390 coding upstream 52741 20779711 ~ 20791739 (-)
mfsd10 LOC106585392 coding upstream 65202 20792172 ~ 20801643 (-)
LOC110525445 LOC106585393 coding upstream 75223 20802193 ~ 20820749 (-)
G484262 NA non-coding downstream 68656 20641190 ~ 20645048 (-)
G484249 NA non-coding downstream 82348 20624675 ~ 20631356 (-)
G484136 NA non-coding downstream 197469 20476734 ~ 20516235 (-)
G484400 NA non-coding upstream 253426 20980396 ~ 20980643 (-)
G484410 NA non-coding upstream 277075 21004045 ~ 21004375 (-)
G484411 NA non-coding upstream 277513 21004483 ~ 21004764 (-)
G484409 NA non-coding upstream 280046 21007016 ~ 21009082 (-)
G484423 NA non-coding upstream 297872 21024842 ~ 21025595 (-)
G484232 NA other downstream 104968 20588262 ~ 20608736 (-)
G484175 NA other downstream 274020 20439307 ~ 20439684 (-)
G483875 NA other downstream 777978 19933244 ~ 19935726 (-)
G483145 NA other downstream 993088 19710075 ~ 19720616 (-)
LOC110525458 LOC106585411 other upstream 393006 21115008 ~ 21121728 (-)
G484807 LOC106585304 other upstream 569610 21296580 ~ 21298173 (-)
G484895 LOC106585423 other upstream 704960 21431930 ~ 21434719 (-)
G485279 NA other upstream 1106578 21833548 ~ 21834360 (-)

Expression


Co-expression Network