RNA id: XM_021605539.2


Basic Information

Item Value
RNA id XM_021605539.2
length 2937
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110525435
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20713704 ~ 20726970 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCTTATCAGCTGCTGTCCTGGGTCCCATGGTGTGCACATCACATCGAGGCCCATCCAAGTTTTCCCTGCACTCTCCTGCCAAGTTGATATCATATAGCACCTGactctgtctatccctgtctgaaCAAGGTCTCAGAACAAGCAATTACAAGATGTCTGACCAACAGGATTCTGTTCTCACCAATGGGGTTCCTGACATAGAAAAGAGTTCTGAGAATTCTAGTGTGATTGGCATTCCTCTTGGAGAAACCAAACCGTTAGTACCAGTTGCCAAACTTCAGCAGAAGGAAATCTACTGCAGTCCCCTCGTCAACGGAGGAGTAGTAGACCATCCACAACCAAACTCAGAGTCAGAGTCTGATGGAGAAGACAAAGACAGTCAGGAGTCAGTTGCTGTAGAACCTGCAGTGATAACCCCATCAAGAATACCTGAAGCACCAGCCAAATTACCCAGATCCCCTGGACAAGCGGGACCTCAAGGGGATCCTCTCTCAGGTGCCTCGGTGCCCCTGAAGCTGTCGGATGTGTCCCTGGCCACAGCAGAGCAGCTCTGGTGCACCTCCAGGGACCAGGCGGTTAAGCTGAGGATGGCTGAGACGGGGCCGGGATCCGAGGCCCCCATGACTATCCACCAGATGTTCTTAAAGACGGTGAATATCTATGGAGACCTGCCTGCGGTGGCGTCTAAGAAAGAGGGGCAGTGGGTAACCCTGACCTGGAGGGAGTACTACCAGCAGTGCAGAGCGGCGGCCAAGAGCTTCCTTAAGTTGGGTCTGGAGCGTTACCATGGCGTCGGTATTCTGGGCTTTAACTCTCCTGAGTGGTTCATCTCAGACATCGGCTGTATCCTGGCTGGGGGTTTTGCTGCAGGCATATACACCACTAACTCCCCCGAGGCGTGTCAGTATGTGGCAGACAACTGTGAGGCCAACGTCCTGGTGGTGGAGAACCACAAACAGCTCCTCAAAATCCTCCAGATTAAGGAACAGCTTCCACACTTGAAAGCTATTGTTCAGTACAAGGATGAACTTCAACAGAAGCTGCCAAACCTGTACACTTGGGCTGAGTTTATGAAGCTGGGTGAGGAGGTGTCTGATGAACGGCTAGATGCTGTGGTGGACAGTCAGAGGGCTAACCAGTGTTGTACGCTCATCTACACCTCTGGAACCACAGGCAACCCCAAAGGGGTCATGCTAAGCCATGACAATATCACCTGGACTTCAAATGCGGTCGGAGCCATGACAAGTCTGCAACATGGTGTGGAGTGCGTGGTGAGCTACCTGCCCCTGAGCCATGTAGCTGCCCAGATCAACGACATGTGGATCTGCATGAGATTTGCAGGGGCAACGTATTTCGCAGACCCAGACGCCCTGAAGGGCTCTTTGGGGACTACTCTGAAAGAGGTGCGCCCCACAAGTTTCCTGGGAGTTCCCCGTGTGTGGGAGAAGATGCAGGAGAAGATGAAAGCCATCGGAGCCAAATCCTCTGGTATGAAGAAAAGAGTGGCTAACTGGGCCAAATCCATCGGATTGCAAGCCAGCTACAGTGCCATGAATGGTGAGAACCTGGTGCCCTGGGGCTTCATGCTGGCAAACAACCTGGTGTTTAAGAAAGTTCGCTGGGCCTTGGGTCTGGACCGCTGCAAGAACTGCTTAACGGGGGCCGCACCCATCACTAAGGAGACTCTGGAGTACTTCATGAGCCTTAGCCTCCCGCTGTATGAGCTGTATGGGATGAGTGAAAGCACCGGCCCTCACACCATCTCCTGGGAGAATAACTTCAAGATCATGAGCTGTGGAAAGGTGGTGGTTGGCTGCCAGACCAAGTTGGACAAGCCAGACGAGGATGGGAATGGTGAGATCTGTTTCTGGGGGCGTCATGTGTTCATGGGCTACCTGAATGAGCCAGAGAAGACTGAGGAGGCCCTGGACCAGGAGGGCTGGCTGCACTCTGGAGACCTGGGCAAGCATGACAAGGACAACTTCCTATTCATCACAGGGAGGATAAAGGAGCTGATCATAACAGCAGGAGGAGAGAACATCCCACCTGTACCCATTGAGGATGCAGTGAAAGCAGAGATTGCCATCATCAGCAACGCCATGTTGCTCGGAGACAAGATGAAATTCCTCTCCATGATGCTCACGCTCAAATGTATAGTTGACGACAATGGCGAGCCGACGGACGAGCTGACCCCAGAGGCTGTGGCGTTCTGCCATCAGCGTGGCATAACGGCAACCAAGGCCTCTGAGATCATAGCCAGTAAGGAACCAGCTATTTATAAGGCCATCCAGGAGGGCATAGAGCATGTCAATGCTAAGGCCACCTCCAATGCCCAGAGGGTCCAGAAGTGGGTCATTTTGGACAGAGATTTCTCTATATCTGGGGGAGAACTGGGACCTACCATGAAGCTAAAGAGGGGGGTTGTTGTCAAAAAGTTCCAAGAGAAAATCAACAAGATGTATGGAATGGCACAAGAATAATAGAGGAACTGAACATGGACTAGAGAACACTTGAGGACTGTAGTTATTGGACTATTAAATGCATCTGTAGACATTTGAGTGTGTCTTGTTTTCCAGTACCTAGAGAATTATCCCATTGGTATCTGCTCCATATCAATATTTAAGCTGTTTTAATGTACATAAGATTTCACAGCATTGATATTTGCACTTTTTTTGTAAATAAACCTTATATTCATCATCAATGCTATACTGTACCCATTTCAAGTAAAGGAAAATGCCTCAAAACAAAATCATTAATGTAATGTTTGTTAAGTGATTCTATCATTATTTGGatggtatactgtagtattttcattttattttagcCAATTATATTCCGTGTACATTATAATACatattaaaatgtttattttcatgGGTTAAATGAACATGATCAATAAAAGCAAACAAACTGTTCtggaccccccccaaaaaa

Function

GO: NA

KEGG:

id description
K15013 ACSBG; long-chain-fatty-acid--CoA ligase ACSBG

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU550385 lncRNA downstream 68656 20641190 ~ 20645048 (-) True G484262
TU550372 lncRNA downstream 82348 20624675 ~ 20631356 (-) True G484249
TU550346 lncRNA downstream 122577 20589234 ~ 20591127 (-) True LOC110525433
TU550343 lncRNA downstream 127484 20584221 ~ 20586220 (-) False LOC110525433
TU550227 lncRNA downstream 197469 20498861 ~ 20516235 (-) True G484136
TU550536 lncRNA upstream 253426 20980396 ~ 20980643 (-) True G484400
TU550548 lncRNA upstream 277075 21004045 ~ 21004375 (-) True G484410
TU550549 lncRNA upstream 277513 21004483 ~ 21004764 (-) True G484411
TU550545 lncRNA upstream 280046 21007016 ~ 21009082 (-) False G484409
TU550562 lncRNA upstream 297872 21024842 ~ 21025595 (-) True G484423
XM_021605542.2 mRNA downstream 14192 20688144 ~ 20699512 (-) True LOC110525438
XM_021605061.2 mRNA downstream 43027 20656495 ~ 20670677 (-) True LOC110525114
XM_021605535.2 mRNA downstream 101103 20603073 ~ 20612601 (-) False zgc:158260
XM_021605534.2 mRNA downstream 101104 20603073 ~ 20612600 (-) False zgc:158260
XM_021604959.2 mRNA upstream 1029 20727999 ~ 20730282 (-) False hint2
NM_001165053.2 mRNA upstream 1043 20728013 ~ 20730276 (-) True hint2
XM_021605550.2 mRNA upstream 18382 20745352 ~ 20754315 (-) False malt1
XM_021605549.2 mRNA upstream 18382 20745352 ~ 20754316 (-) False malt1
XM_036979575.1 mRNA upstream 18382 20745352 ~ 20755400 (-) True malt1
TU550351 other downstream 104968 20588262 ~ 20608736 (-) True G484232
TU550345 other downstream 128057 20584221 ~ 20585647 (-) False LOC110525433
TU550275 other downstream 274020 20439307 ~ 20439684 (-) True G484175
TU549918 other downstream 777978 19933244 ~ 19935726 (-) False G483875
TU549032 other downstream 993088 19710545 ~ 19720616 (-) False G483145
TU550546 other upstream 280046 21007016 ~ 21009082 (-) False G484409
TU550547 other upstream 280046 21007016 ~ 21009082 (-) True G484409
TU550627 other upstream 393006 21119976 ~ 21121067 (-) True LOC110525458
TU551014 other upstream 569610 21296580 ~ 21298173 (-) True G484807
TU551114 other upstream 704960 21431930 ~ 21434719 (-) True G484895

Expression Profile